Expression Database

Tissue Summaries

Expression Database

GUDMAP:21411

Gene:	Cldn6, claudin 6
Stage:	Theiler Stage 20
Tissue:	genital tubercle of male
Species:	Mus musculus
Assay Type:	ISH opt-wholemount

Images

	Isosurface of the same embryo (after OPT). Heatmap of gene expression.
	Sagittal virtual section of the same embryo (after OPT). Grey shows the anatomy of the tubercle, heatmap is gene expression. The digital section's heatmap is obscured by a green urethra.
	Brightfield image of the same embryo (before OPT).
	Sagittal Sections Movie - Oblique Slice (mpg)
	Transverse Sections Movie - Oblique Slice (mpg)
	Tubercle Movie - Isosurface (mpg)
	Tubercle Movie - Volren (mpg)
	Wholemount Movie - Volren (mpg)

Submitters

Principal Investigator(s):	Martin J. Cohn, University of Florida, Gainesville, FL, USA, mjcohn@ufl.edu
Contributors:	Monique Welten, Emily Merton, Brooke A. Armfield, Michael Eidge, Martin J. Cohn
Submitted By:	Monique Welten, University of Florida, Gainesville, FL, USA, monique.welten@googlemail.com
Batch ID:	368
Submission ID:	9999992955

Expression Mapping

Expression Strengths Key:

	Present (unspecified strength)
	Present (strong)
	Present (moderate)
	Present (weak)
	Uncertain
	Not Detected

Expression Patterns Key:

	Homogeneous
	Graded
	Regional
	Spotted
	Ubiquitous

	Restricted
	Single cell

Nerve Density:

Relative to Total:

	High
	Medium
	Low

Relative to P0/Adult:

	Increase, large
	Increase, small
	Decrease, large
	Decrease, small

	Contains note

View annotated components as a list

Show annotation under groups

Probe

Gene:

Symbol: Cldn6

Name: claudin 6 (MGI:1859284)

Probe ID:

MGI:1409351 (maprobe:8775)

Name of cDNA:

MGC clone 11572

Sequence ID:

Origin of Clone used to make the Probe:

		Strain:	FVB/N
		Tissue:	mammary tumor

Probe Type:

RNA

Type:

antisense

Labelled with:

digoxigenin

Visualisation method:

alkaline phosphatase + NBT/BCIP

Lab Probe ID:

Cldn6 (91)

Curator Notes:

Also known as IMAGE:3594823

Specimen

Stage:

Other Staging System:

12.5 dpc

Tissue:

genital tubercle of male

Strain:

CD1

Genotype:

wild type

Sex:

male

Specimen Preparation:

opt-wholemount

	Fixation Method:	4% paraformaldehyde
	Embedding:	Agarose

Experiment Notes:


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