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Original Submission Archive

Archive ID

Source Lab

Date Received

Data Type

Filename & Status

Notes
274 Potter 3rd-May-2013 NGS

Crym_P1_cDNA.bam, Crym_P1_cDNA.fastq, Crym_P1_mRNA.bam, Crym_P1_mRNA.fastq

Crym_P4_cDNA.bam, Crym_P4_cDNA.fastq, Crym_P4_mRNA.bam, Crym_P4_mRNA.fastq,

050213_GUDMAP_NextGen_Metadata_Submission.xlsx

Next Gene Sequencing submissions. Received via HGU Transfer.
273 Cohn 1st-May-2013 OPT

MC_OPT_FoxA2_F_02052013.zip, MC_OPT_FoxA2_M_0205201313.zip, MC_OPT_Krt8_F_01052013.zip, MC_OPT_Krt8_M_01052013.zip, MC_OPT_Gstt3_F_03052013.zip, MC_OPT_Gstt3_M_03052013.zip, MC_OPT_Ripk4_F_06052013.zip, MC_OPT_Ripk4_M_06052013.zip, MC_OPT_Ripk4_M2_06052013.zip

9 OPT submissions. Krt8, male and female. Foxa2 male and female. Gstt3, male and female. Ripk4, female, male (early M), male (late M2). Sent via HGU transfer, 01-05-13 to 07-05-13. Meta-data submitted via Online Submission Interface. Batch 368, submissions 9999992859 and 9999992860 (Krt8). 9999992862 and 9999992863 (Foxa2). 9999992865 and 9999992866 (Gstt3). 9999992876-78 (Ripk4).
272 Cohn 19th-April-2013 OPT

OPT_reference_model_spreadsheet_Apr2013_archive272.xls

One OPT reference model submission (67) and 2 associated Tif files.
271 Cohn 10th-April-2013 OPT

MC_OPT_Mal2_Male675_040412.zip, MC_OPT_Mal2_Female_635_030412.zip, MC_OPT_Foxa1_male_676_080412.zip, MC_OPT_Foxa1_Female_636_080412.zip, MC_OPT_Clca3_female_090413.zip, MC_OPT_Clca3_male_090413.zip

6 OPT submissions. Mal2, Foxa1 and Clc3a, male and female. Sent via HGU transfer.

Meta-data submitted via Online Submission Interface. Batch 368. Status incomplete (10th April 2013).
270 Cohn 13th-March-2013 OPT

OPT_reference_model_spreadsheet_Mar_2013.xls

Two OPT reference submissions (65-66). 4 associated Tif files added 24 April 2013.
269 Keast 31st-January-2013 IHC

keast_jan2013.zip

Jan2013_Keast_antibody_v3_3.xls

Zip file with uploads with E13.5 data plus 4 P21 IHC. Total image number = 48. XLS file with data included.

Original zip file name changed from "January Upload 2013 Keast Lab E13.5 +.zip"
268 Cohn 11th-January-2013 OPT

OPT_reference_model_spreadsheet_Jan_23_2013_EO.xls

tiffs.zip

4 OPT submissions (61-64). Four reference models to replace MC_OPT_310112_13, MC_OPT_290212_16 and MC_OPT_290212_17 (Archive 254, Jan 2012) and MC_OPT_250712_55 (Archive 258, May 2012)
267 Cohn 30th-November-2012 OPT

OPT_reference_model_spreadsheet_Nov_2012.xls

Tiffs.zip

5 OPT submissions (56-60).
266 Mendelsohn 27th-October-2012 ISH

100112_kas2218_ISH.zip

100112_ISH_batch_submission.xls

High Resolution (14). Using online annotation tool Batch:340
265 Keast 26th-October-2012 IHC

JK_26102012_046.zip

Keast_20121026_antibody_v3_3.xlsx

October upload to gudmap database from Keast Lab 46 tif in zip (JK_26102012_046.zip) plus xls.
264 Keast 18th-September-2012 IHC

Keast_180912.zip

Inverted_images_16-38_Sept_Upload.zip

KeastLab_upload_20120918_antibody_v3_3.xlsx

Testing upload for Fluorescence antibody staining, from the Keast Lab. 38 images in zip plus .xls with details.

Updated files of images 16-38 provided 16-Oct-2012. These are inverted images.
263 Humphreys 31st-August-2012 Microarray

External submitter/Data is CONFIDENTIAL/pericytes
262 Humphreys 31st-August-2012 Microarray

External submitter/Data is CONFIDENTIAL/podocytes
261 Cohn 9th-August-2012 OPT

A261_Upk1b_150812.xls

OPT gene expression submission for Upk1b (1).

Includes revised zip file containing resubmitted ReconC2 directory
260 Mendelsohn 27th-June-2012 ISH

062712_kas2218_ISH.zip

062712_ISH_batch_submission.xls

High Resolution (18). Using online annotation tool Batch:335.
259 Potter 15th-May-2012 NGS_Data

Crym_P1_cDNA.fastq, Crym_P1_mRNA.fastq, Crym_P4_cDNA.fastq, Crym_P4_mRNA.fastq

4 .fastq sent to us on 15-5-12. No metadata, no processed files.
258 Cohn 7th-May-2012 OPT

A258_spreadsheet_150812.xls

22 OPT submissions (24-45). Downloaded from Bruce's BMI Xythos site 7-5-12, 23-5-12, 28-5-12.
File names for Amira snapshots (supplied 7th May2012 - 24th May 2012) have been added to the spreadsheet. The spreadsheet also contains corrected specimen details (column 41) for reference embryos 40-45.

15 August 2012: a further 10 OPT submissions (46-55) were added to the Archive 258 on 15 August 2012. Files uploaded to Zend 8th & 9th August 2012 (download 15th August 2012). These 10 submissions were added to the following spreadsheet: A258_spreadsheet_150812.xls.

Jan 2013: 1 reference model (MC_OPT_250712_55) withdrawn giving a new total of 31 submissions for this archive.
257 Little 24th-May-2012 ISH

GUDMAP_UQ_240512_1444.tar.gz

UQ_submission_PB_SISHBatch338_for_submit.xls

High Resolution (24). Using online annotation tool Batch:338
256 Mendelsohn 19th-March-2012 ISH

031812_kas2218_ISH.zip

031812_ISH_batch_submission.xls

High Resolution (4). Using online annotation tool Batch:334
255 Southard-Smith 1st-February-2012 ISH

GUDMAP_MS2_310112.zip

0120_2012_WISH_Submission_spreadsheet_Batch317_MS2Lab.xls

High Resolution (2). Using online annotation tool Batch:317
254 Cohn 30th-January-2012 OPT

A254_opt_spreadsheet_300112_Sue12July2012.xls

23 OPT reference models (1-23). Downloaded from Bruce's BMI Xythos site 30-1-12, 31-1-12, 7-3-12, 19-3-12.

File names for Amira snapshots (supplied 30th Jan 2012 - 19th March 2012) have been added to the spreadheet.

Jan 2013: 3 reference models (MC_OPT_310112_13, MC_OPT_290212_16 and MC_OPT_290212_17) withdrawn giving a new total of 20 submissions for this archive.
253 Little 31st-October-2011 ISH

GUDMAP_UQ_311111_0929.tar.gz

UQ_submission_PB_SISHBatch289_for_submit.xls

High Resolution (23). Using online annotation tool Batch:289.
252 Potter 29th-September-2011 Microarray

PotterCELFiles.zip

Kidney array data. 15 CEL files for Scamp (Single cell amplification) series and 3 CEL for captopril series. 5 further CEL files for Remec samples that are not currently in GUDMAP DB.
251 Lessard 8th-September-2011 Microarray

Lessard_Julia_new_GT.zip

8 CEL files. E14.5 male and female genital tubercle samples.
250 Vezina 25th-July-2011 ISH

Vezina_batch_285.zip

Next_Submission.xlsx

98 submissions. Using online annotation tool Batch:285.
249 Little 13th-July-2011 ISH

GUDMAP_UQ_130711_1530.tar.gz

UQ_submission_PB_SISHBatch280_for_submit.xls

High Resolution (13). Using online annotation tool Batch:280.
248 Editorial Office 10th-June-2011 ISH

Duplicate_images_new.zip

Duplicate_image_corrections_for_database_10_Jun_2011.xls

Curation of duplicate images. The spreadsheet contains the corrected image file details and the folder holds images to be added to Archives 76, 114 and 117.
247 Vezina 27th-May-2011 ISH

Other_Genes_Submission.zip

Other_genes-To_be_submitted.xlsx

78 submissions. Using online annotation tool Batch:283
(Initial number of submissions: 83. 3 submissions (Lrp6) removed as requested by C. Vezina. 2 submissions (Esrrg) removed because these consisted of new images to be added to ISH data already public in GUDMAP).
246 Vezina 27th-May-2011 ISH

2Wnts_Manuscript_Submission.zip

Wnt_manuscript-To_be_submitted.xlsx

66 submissions. Using online annotation tool Batch:282
(Initial number of submissions: 64. 2 submissions (Wnt9b) added from Archive 245 at submitter's request
245 Vezina 27th-May-2011 ISH

Compartments_Manuscript_Submission.zip

Compartments-To_be_submitted.xlsx

61 submissions. Using online annotation tool Batch:281
(Initial number of submissions: 65. 2 submissions (Kremen1) removed because these consisted of new images to be added to ISH data already public in GUDMAP. 2 submissions (Wnt9b) removed and uploaded with data from Archive 246).
244 Southard-Smith 10th-May-2011 Microarray

MicroarrayUpload_10May2011.zip

MS2Lab_011311_Microarray_V3.xls

MS2Lab_051011_Microarray_V1.xls

ST-1.0 Array (15). E14 & E15 bladder with pelvic ganglia attached and E14 & E15 pelvic ganglia.
243 Little 5th-May-2011 ISH

GUDMAP_UQ_050511_1400.tar.gz

UQ_submission_PB_SISHBatch279_for_submit.xls

High Resolution (33). Using online annotation tool Batch:279
242 Southard-Smith 20th-April-2011 ISH

GUDMAP_MS2_042011.zip

0420_2011_WISH_Submission_spreadsheet_Batch271_MS2Lab_V5.xls

20 submissions. Using online annotation tool Batch:271
241 Little 21st-April-2011 ISH

GUDMAP_UQ_210411_1245.tar.gz

UQ_submission_PB_SISHBatch278_for_submit.xls

High Resolution (9). Using online annotation tool Batch:278
240 Little 20th-April-2011 ISH

GUDMAP_UQ_200411_1416.tar.gz

UQ_submission_PB_SISHBatch276_for_submit.xls

High Resolution (14). Using online annotation tool Batch:276
239 Mendelsohn 6th-March-2011 ISH

GUDMAP_Columnbia_060311_49.tar.gz

uptopeg3(266_)_3_5_11_submission_andyX.xlsx

49 submissions. Using online annotation tool Batch:266
238 Vezina 17th-March-2011 ISH

Vezina 17 Mar 2011 submission.zip

17 Mar 2011 Submission Spreadsheet.xlsx

30 submissions. Using online annotation tool Batch:275
237 Little 11th-March-2011 ISH

GUDMAP_UQ_110311_1530.tar.gz

UQ_submission_PB_SISHBatch274.xls

29 submissions. Using online annotation tool Batch:274
236 Southard-Smith 13th-January-2011 Microarray

MS2_Microarray_08Mar2011.zip

MS2Lab_011311_Microarray_V3.xls

Superseded by archive 244
235 Little 21st-February-2011 ISH

GUDMAP_UQ_210211_1250.tar.gz

UQ_submission_PB_SISHBach272_for_submit.xls

A235_MissingImages.zip

High Resolution (36). Using online annotation tool Batch:272
234 Capel 1st-February-2011 Microarray

Capel_microarray_template.xls

ST-1.0 Array (91)

Germ cells, supporting cells, interstitial cells and endothelial cells in the developing testis and ovary at 11.5, 12.5, and 13.5 dpc
233 Little 26th-November-2010 ISH

GUDMAP_UQ_261110_1300.tar.gz

UQ_submission_PB_SISHBatch268_for_submit.xls

High Resolution(17). Using online annotation tool Batch:268
232 Little 25th-October-2010 ISH

GUDMAP_UQ_251010_1538.tar.gz

UQ_submission_PB_SISHBatch267_for_submit.xls

High Resolution(9). Using online annotation tool Batch:267
231 McMahon 13th-October-2010 ISH

MTFv5_Complete_Annotation_toGUDMAPOct10.xls

Updated annotation list for MTF wholemount in situ analysis.
230 Little 29th-September-2010 ISH

GUDMAP_UQ_290910_1158.tar.gz

UQ_submission_PB_SISHBatch265_for_submit.xls

High Resolution(22). Using online annotation tool Batch:265
229 Potter 9th-August-2010 Microarray

GUDMAP_Images.zip

GUDMAP_mouse_images.docx

Image files for updating array data. Jane Brennan's request.
228 Little 13th-July-2010 ISH

GUDMAP_UQ_130710_1342.tar.gz

UQ_submission_PB_SISHBatch261_for_submit.xls

High Resolution(7). Using online annotation tool Batch:261
227 Little 13th-July-2010 ISH

GUDMAP_UQ_130710_1039.tar.gz

UQ_submission_PB_WISHBatch264_for_submit.xls

High Resolution(16). Using online annotation tool Batch:264
226 Little 7th-May-2010 ISH

GUDMAP_UQ_070510_1226.tar.gz

UQ_submission_PB_SISHBatch257_for_submit.xls

High Resolution(17). Using online annotation tool Batch:257
225 Little 7th-May-2010 ISH

GUDMAP_UQ_070510_1050.tar.gz

UQ_submission_PB_SISHBatch260_for_submit.xls

High Resolution(14). Using online annotation tool Batch:260
224 Mendelsohn 21st-April-2010 ISH

GUDMAP_Mendelsohn_210410.zip

BATCH_252_MEND_SISH.xlsx

Submissions(64). Images(94). Batch:252
223 Little 20th-April-2010 ISH

GUDMAP_UQ_200410_1446.tar.gz

UQ_submission_PB_WISHBatch248_for_submit.xls

High Resolution(14). Using online annotation tool Batch:248
222 Little 16th-April-2010 ISH

GUDMAP_UQ_160410_1257.tar.gz

UQ_submission_PB_SISHBatch256_for_submit.xls

High Resolution(28). Using online annotation tool Batch:256
221 Potter 13th-April-2010 Microarray

GUDMAP_Potterlab_041310_1700_submission.zip

GUDMAP_Potterlab_041310_1700_Submission.xls

ST-1.0 Array (3)

Adult Glomerular Endothelial
220 Potter 13th-April-2010 Microarray

GUDMAP_Potterlab_041310_1600_submission.zip

GUDMAP_Potterlab_041310_1600_Submission.xls

ST-1.0 Array (3)

Adult Cortical Endothelial
219 Little 12th-April-2010 ISH

GUDMAP_UQ_120410_1535.tar.gz

UQ_submission_PB_SISHBatch251_for_submit.xls

High Resolution(17). Using online annotation tool Batch:251
218 Little 19th-March-2010 ISH

GUDMAP_UQ_190310_1623.tar.gz

UQ_submission_PB_SISHBatch250_for_submit.xls

High Resolution(6). Using online annotation tool Batch:250
217 Little 19th-March-2010 ISH

GUDMAP_UQ_190310_1115.tar.gz

UQ_submission_PB_SISHBatch249_for_submit.xls

High Resolution(9). Using online annotation tool Batch:249
216 Little 18th-March-2010 ISH

GUDMAP_UQ_180310_1413.tar.gz

UQ_submission_PB_SISHBatch246_for_submit.xls

High Resolution(12). Using online annotation tool Batch:246
215 Little 18th-March-2010 ISH

GUDMAP_UQ_180310_1157.tar.gz

UQ_submission_PB_SISHBatch243_for_submit.xls

High Resolution(15). Using online annotation tool Batch:243
214 Little 18th-March-2010 ISH

GUDMAP_UQ_180310_0937.tar.gz

UQ_submission_PB_SISHBatch240_for_submit.xls

High Resolution(25). Using online annotation tool Batch:240
213 Little 5th-March-2010 ISH

GUDMAP_UQ_050310_1200.tar.gz

UQ_submission_PB_SISHBatch228_for_submit.xls

UQ_submission_PB_SISHBatch228.xls

High Resolution(32). Using online annotation tool Batch:228
212 Little 14th-Jan-2010 ISH

GUDMAP_UQ_140110_1530.tar.gz

UQ_submission_PB_SISHBatch235_for_submit.xls

High Resolution(43). Using online annotation tool Batch:235
211 Southard-Smith 17th-Dec-2009 ISH

MSS_Batch183.zip

reporter_generic_171209_Batch183_v4.xls

13 submissions. Using online annotation tool Batch:183
210 Little 11th-Jan-2010 ISH

GUDMAP_UQ_110110_1542.tar.gz

UQ_submission_PB_SISHBatch233_for_submit.xls

High Resolution(14). Using online annotation tool Batch:233
209 Little 11th-Jan-2010 ISH

GUDMAP_UQ_110110_1541.tar.gz

UQ_submission_PB_SISHBatch232_for_submit.xls

High Resolution(15). Using online annotation tool Batch:232
208 Potter 7th-Jan-2010 Microarray

GUDMAP_Potterlab_0107910_1300_Submission.zip

GUDMAP_Potterlab_0107910_0100_Submission.xls

ST-1.0 Array (3)

E10.5 Ureteric Duct
207 Potter 7th-Jan-2010 Microarray

GUDMAP_Potterlab_1010710_1230_submission.zip

GUDMAP_Potterlab_0107910_1230_Submission.xls

ST-1.0 Array (3)

E10.5 Ureteric Bud
206 Potter 7th-Jan-2010 Microarray

GUDMAP_Potterlab_1010710_1100_submission.zip

GUDMAP_Potterlab_0107910_1100_Submission.xls

ST-1.0 Array (3)

E15.5 Endothelial
205 Potter 21st-Dec-2009 Microarray

GUDMAP_Potterlab_122209_1500_Submission.zip

GUDMAP_Potterlab_122209_1500_Submission.xls

ST-1.0 Array (3)

Adult Mesangial
204 Potter 19th-Dec-2009 Microarray

GUDMAP_Potterlab_121909_1430_Submission.zip

GUDMAP_Potterlab_121909_1430_Submission.xls

ST-1.0 Array (3)

Adult Capsule
203 Southard-Smith 9th-Dec-2009 ISH

GUDMAP_MS2_041209_0132.tar.gz

Reporter_Generic_V2_120409.xls

Low resolution (109). Using online annotation tool, Batch:189

 
202 Potter 30th-Nov-2009 Microarray

GUDMAP_Potterlab_113009_1800_submission.zip

GUDMAP_Potterlab_113009_1030_Submission.xls

ST-1.0 Array (3)

Adult Medullary Endothelial Cells
201 Little 27th-Nov-2009 ISH

GUDMAP_UQ_271109_1331.tar.gz

UQ_submission_PB_SISHBatch224_for_submit.xls

High resolution (54). Using online annotation tool, Batch:224
200 Little 27th-Nov-2009 ISH

GUDMAP_UQ_271109_1118.tar.gz

UQ_submission_PB_SISHBatch231_for_submit.xls

High resolution (18). Using online annotation tool, Batch: 231

 
199 Mendelsohn 19th-Nov-2009 ISH

GUDMAP_Col_191109.zip

11_12_AndyCM_Batch230_SPREADSHEETMEND_MTF_WISH.xls

Low resolution (27). Using online annotation tool, Batch:230
198 Little 26th-Oct-2009 ISH

GUDMAP_UQ_261009_1500.tar.gz.xaa2
GUDMAP_UQ_261009_1500.tar.gz.xab2

UQ_submission_PB_WISHBatch226_for_submit.xls

Low resolution (62) Using online annotation tool, Batch:226
197 McMahon 19th-Oct-2009 ISH

GUDMAP_HU_191009.tar.gz

Hyb326-submission.xls

70 submissions. Low resolution
196 Little 15th-Oct-2009 ISH

GUDMAP_UQ_151009_1540.tar.gz.xaa
GUDMAP_UQ_151009_1540.tar.gz.xab

UQ_submission_PB_WISHBatch223_for_submit.xls

Low resolution (70) Using online annotation tool, Batch:223
195 Mendelsohn 10th-Oct-2009 ISH

GUDMAP_MENDELSOHN_091009.zip

SPREADSHEETMEND100809.xls

High resolution (24)
194 Little 23rd-Sep-2009 ISH

GUDMAP_UQ_230909_0956.tar.gz

UQ_submission_PB_SISH216_for_submit.xls

High resolution (22). Using online annotation tool, Batch: 216
193 Little 25th-August-2009 ISH

GUDMAP_UQ_250809_0936.tar.gz

UQ_submission_PB_SISHBatch208_for_submit.xls

49 submissions (high resolution)
192 McMahon 10th-August-2009 ISH

GUDMAP_HU_100809_0650.tgz

3D3DHyb18-submission.xlsx

184 submissions (low resolution)
191 McMahon 10th-August-2009 ISH

GUDMAP_HU_100809_0702.tgz

3DHyb115-submission.xlsx

181 submissions (low resolution)
190 McMahon 4th-August-2009 ISH

GUDMAP_HU_040809_1700.tgz

July-Hyb2-submission.xlsx

143 submissions (low resolution)
189 Little 20th-July-2009 ISH

GUDMAP_UQ_200709_1644.tar.gz.partaa
GUDMAP_UQ_200709_1644.tar.gz.partab

UQ_submission_PB_WISHBatch190_for_submit.xls

Low Resolution(68). Using online annotation tool, Batch:190
188 McMahon 15th-July-2009 ISH

GUDMAP_HU_150709.tar.gz

June-Hyb1-submission.xlsx

108 submissions (low resolution)
187 Mendelsohn 26th-June-2009 ISH

 

Submissions to be resubmitted
186 Mendelsohn 25th-June-2009 ISH

 

Submissions to be resubmitted
185 Little 1st-June-2009 ISH

GUDMAP_UQ_010609_1358.tar.gz

UQ_submission_PB_WISHBatch184_for_submit.xls

Low Resolution (45) Using online annotation tool, Bathch: 184
184 Potter 6th-May-2009 Microarray

GUDMAP_Potterlab_050509_1030_Submission.zip

GUDMAP_Potterlab_050509_1030_Submission.xls

ST-1.0 Array (3)
183 Potter 6th-May-2009 Microarray

GUDMAP_Potterlab_050509_0830.zip

PotterLab_050509_GUDMAP_submission.xls

ST-1.0 Array (3)
182 McMahon 1st-May-2009 ISH

harvard_retaken_images.tar.gz

pictures_retaken.xls

161 images. Updates to previous submissions
181 McMahon 1st-May-2009 ISH

GUDMAP_HU_290409_1608.tgz

Hyb1-22-submission.xls

Low Resolution(90)
180 McMahon 1st-May-2009 ISH

GUDMAP_HU_290409_1614.tgz

Hyb1-29-submission.xls

Low Resolution(88)
179 McMahon 1st-May-2009 ISH

GUDMAP_HU_290409_1357.tgz

Hyb1-26-submission.xls

Low Resolution(186)
178 Southard-Smith 29th-April-2009 ISH

GUDMAP_MS2_290409_1406.tar.gz

_WISH-Box2_Submission_spreadsheet_Batch183_MS2Lab_V3.xls

Low Resolution (73)

1 entry removed from original spreadsheet
177 Southard-Smith 24th-April-2009 ISH

GUDMAP_MS2_230409_0954.tar.gz

WISH-Box1_Submission_spreadsheet_V2_MS2Lab.xls

Low Resolution(26)
176 Little 9th-April-2009 ISH

GUDMAP_UQ_090409_1223.tar.gz.partaa_2
GUDMAP_UQ_090409_1223.tar.gz.partab
GUDMAP_UQ_090409_1223.tar.gz.partab

UQ_submission_PB_WISHBatch175_for_submit.xls

Low Resolution (115) Using online annotation tool, Bathch: 175
175 McMahon 9th-April-2009 ISH

GUDMAP_HU_090409_1446.tar.gz

Hyb15b-submission.xlsx

Low Resolution (26)
174 McMahon 26th-March-2009 ISH

GUDMAP_HU_260309_1622.zip

Hyb15a-submit.xls

Low Resolution (42)
173 McMahon 25th-March-2009 ISH

GUDMAP_HU_250309_1539.zip

Hyb12b-submission.xlsx

Low Resolution (31)
172 Potter 24th-March-2009 Microarray

GUDMAP_Potterlab_032409_1400_2.zip

PotterLab 032409_GUDMAP_2_submission.xls
SSPASSOC13.xls

Microarray Affymetrix ST-1.0 (3)
171 Potter 24th-March-2009 Microarray

GUDMAP_Potterlab_032409_0700.zip

PotterLab 032209_GUDMAP_submission.xls
SSPASSOC12.xls

Microarray Affymetrix ST-1.0 (3)
170 McMahon 24th-March-2009 ISH

jing240309.tar.gz

McMahon_SISH_update_050209_Yu.xls

Low Resolution (8). Created from Online Annotation interface: Batch: 172
169 Lessard 20th-March-2009 Microarray

GUDMAP_Lessard_200309_1600.zip

200309_1600_microarray_spreadsheet_NEM .xls
200309_1600_assoc_NEM.xls

Microarray (3)
168 Little 13th-March-2009 ISH

GUDMAP_UQ_130309_1513.tar.gz

UQ_submission_PB_WISHBatch173_for_submit.xls

Low Resolution (44) Created from Online Annotation Interface: Batch 173
167 Little 12th-March-2009 ISH

GUDMAP_UQ_120309_1135.tar.gz.partaa
GUDMAP_UQ_120309_1135.tar.gz.partab
GUDMAP_UQ_120309_1135.tar.gz.partac

UQ_submission_PB_WISHBatch171_for_submit.xls

Low Resolution (78) Created from Online Annotation Interface: Batch 171
166 Little 24th-Feb-2009 ISH

GUDMAP_UQ_230209_1401.tar.gz

UQ_submission_PB_Batch170_for_submit.xls

ISH High Res (11) Created from Online Annotation Interface Batch 170
165 Little 24th-Feb-2009 IHC

GUDMAP_UQ_230209_1400.tar.gz

UQ_submission_AB_Batch169_for_submit.xls

IHC High Res (2) Created from Online Annotation Interface Batch 169
164 Lessard 20th-Feb-2009 Microarray

GUDMAP_Lessard_200309_1655.zip

090320_1405_microarray_spreadsheet_NEM .xls
090320_1405_assoc_NEM.xls

Microarray (6)
163 Lessard 20th-Feb-2009 Microarray

GUDMAP_Lessard_200309_1650.zip

090319_1405_microarray_spreadsheet_NEM .xls
090319_1405_assoc_NEM.xls

Microarray (6)
162 McMahon 28th-Jan-2009 ISH

GUDMAP_HU_280109_1616.tar.gz

Hyb12-11-submit.xls

Low Resolution (46)
161 Potter/Gomez 29th-Jan-2009 Microarray

GUDMAP_Potterlab_012709_1400.zip

012709_GUDMAP_submission.xls
SSPASSOC11.xls

ST-1.0 Array (6)
160 Potter 26th-Jan-2009 Microarray

012609_GUDMAP_submission.zip

012609_GUDMAP_submission.xls
SSPASSOC10.xls

ST-1.0 Array (15)
159 Mendelsohn 22nd-December-2008 ISH

cmbatch61808.xls

GUDMAP_CU_221208.zip

ISH (16). Created from Online Annotation Interface

158 Little 17th-December-2008 ISH

GUDMAP_UQ_171208_1600.tar.gz

UQ_submission_PB_SISHBatch161_for_submit.xls

ISH High Res (17)
Batch 161 Created from Online Annotation Interface
157 Little 17th-December-2008 ISH

GUDMAP_UQ_171208_1502.tar.gz

UQ_submission_PB_SISH_150408_for_submit.xls

ISH High Res (25)

156 McMahon 12th-December-2008 ISH

GUDMAP_HU_121208_1627.tgz

Small_batch_of_5.xls

ISH Low Res (6)

155 Potter 12th-December-2008 Microarray

GUDMAP_Potterlab_121008_1100.zip

121108_GUDMAP_submission.xls
SSPASSOC9.xls

Microarray (3)

154 McMahon 25th-November-2008 ISH

GUDMAP_HU_251108_1408.zip

Plate12-submission.xlsx

ISH Low Res (71)
153 McMahon 08th-November-2008 ISH

GUDMAP_HU_081108_1201.tgz

Plate11-submission.xls

ISH Low Res (38)
152 Little 28th-October_2008 ISH

GUDMAP_UQ_281008_1350.tar.gz

UQ_submission_PB_SISHBatch133_for_submit.xls

ISH High Res (12)

Created from Online Annotation Interface
151 McMahon 24th-October-2008 ISH

GUDMAP_HU_241008_1723.zip

Plate10-submit.xls

ISH Low Res (34)

150 Little 13th-October_2008 ISH

GUDMAP_UQ_131008_1102.tar.gz

UQ_submission_PB_WMISH180908_for_submit.xls

ISH Low Res (52)

149 McMahon 7th-October-2008 ISH

GUDMAP_HU_071008_1655.zip

Plate9-submission-1.xlsx

ISH Low Res (36)

148 Little 3rd-October-2008 ISH

GUDMAP_UQ_031008_1025.tar.gz

UQ_submission_PB_WMISH250908_for_submit.xls

ISH Low Res (12)

Created from Online Annotation Interface
147 Little 3rd-October-2008 ISH

GUDMAP_UQ_031008_1024.tar.gz

UQ_submission_PB_WMISH230908_125_original_for_submit.xls

ISH Low Res (12)

(Via online annotation tool)

146 McMahon 24th-September-2008 ISH

GUDMAP_HU_180908_1311.zip

Plate8-submission.xls

ISH Low Res (76)

145 Little 24th-September-2008 ISH

GUDMAP_UQ_240908_1327.tar.gz

UQ_submission_PB_240908_126_for_submit.xls

ISH High Res (10)

Created from Online Annotation Interface
144 Little 23rd-September-2008 ISH

GUDMAP_UQ_230908_1400.tar.gz

UQ_submission_PB_SISH170908_for_submit.xls

ISH High Res (28)

143 Little 19th-September-2008 ISH

GUDMAP_UQ_190908_1224.tar.gz

UQ_submission_PB_WMISH170908_for_submit.xls

ISH Low Res (15)

142 Little 12th-September-2008 ISH

GUDMAP_UQ_120908_1406.tar.gz.partaa
GUDMAP_UQ_120908_1406.tar.gz.partab

UQ_submission_PB_WMISH080908_for_submit.xls

ISH Low Res (58)

141 McMahon 27th-August-2008 ISH

GUDMAP_HU_270808_1555.zip

MS-insitu.xls

ISH Low Res TS23 (14)

140 Gaido 29th-August-2008 Microarray

Gaido_epididymis_allpresent.xls
Gaido_epididymis_compare_daytoday.xls
Gaido_epididymis_compare_wrt_GD12.xls
Gaido_epididymis_goldstandard.xls
Gaido_epididymis_vs_ovary_fcNfdr.xls
Gaido_ovary_allpresent.xls
Gaido_ovary_compare_daytoday.xls
Gaido_ovary_compare_wrtGD11.xls
Gaido_ovary_goldstandard.xls
Gaido_testes_compare_daytoday.xls
Gaido_testes_compare_wrtGD11.xls
Gaido_testes_goldstandard.xls
Gaido_testes_vs_ovary_fcNfdr.xls

all_files.zip

Comparison and Gold Standard data. 13 spreadsheets

139 Gaido 8th-September-2008 ISH

GUDMAP_GAIDO_FISH_080908_1230.zip

GUDMAP_GAIDO_FISH_080908_generic_V1.xls

ISH High Resolution (3)

138 Potter 26th-August-2008 Microarray

GUDMAP_Potterlab_082508_1400.zip

No description given. (3) samples

137 Lessard 21st-August-2008 Microarray

GUDMAP_LESSARD_082108.zip

No description given
136 Potter 1st-July-2008 Microarray

Hes5_GENSAT_Analysis.zip

GENSAT Analyses plus movies
135 Little 18th-July-2008 ISH

UQ_submission_PB_220408_for_submit.xls

GUDMAP_UQ_160708_1445_partaa
GUDMAP_UQ_160708_1445_partab
GUDMAP_UQ_160708_1445_partac
GUDMAP_UQ_160708_1445_partad
GUDMAP_UQ_160708_1445_partae
GUDMAP_UQ_160708_1445_partaf

ISH High Resolution (92)

134 Potter 17th-July-2008 Microarray

071708_GUDMAP_submission.xls
SSPASSOC6.xls
GUDMAP_Potterlab_071708_900.zip

Microarray (3)

133 McMahon 11th-July-2008 ISH

Plate7-submit-ready.xls
GUDMAP_HU_110708_1649.zip

ISH Low Resolution (46)
132 McMahon 8th-July-2008 ISH

Plate6b-submit.xls
GUDMAP_HU_070708_1506.zip

ISH Low Resolution (43)
131 McMahon 7th-July-2008 ISH

Plate6a-submit2003.xls
GUDMAP_HU_060708_2315.zip

ISH Low Resolution (48)
130 McMahon 6th-July-2008 ISH

Plate5b-submit.xls
GUDMAP_HU_050708_1936.zip

ISH Low Resolution (42)
129 McMahon 5th-July-2008 ISH

Plate5a-submit.xls
GUDMAP_HU_040708_2001.zip

ISH Low Resolution (48)
128 McMahon 4th-July-2008 ISH

Plate4-submit.xls
GUDMAP_HU_030708_2010.zip

ISH Low Resolution (70)
127 McMahon 3rd-July-2008 ISH

Plate3b-submit.xls
GUDMAP_HU_020708_1924.zip

ISH Low Resolution (48)
126 McMahon 3rd-July-2008 ISH

Plate3a-submit.xls
GUDMAP_HU_020708_1513.zip

ISH Low Resolution (46)
125 McMahon 1st-July-2008 ISH

Plate2-submit.xls
GUDMAP_HU_010708_0716.zip

ISH Low Resolution (47)
124 McMahon 1st-July-2008 ISH

Plate1b-submit.xls

GUDMAP_HU_300608_2317.zip

ISH Low Resolution (48)
123 McMahon 1st-July-2008 ISH

Plate1A-submit-1-2003.xls

GUDMAP_HU_300608_2236.zip

ISH Low Resolution (48)

122 McMahon 20th-June-2008 Probe

HU-Riken-probes-June20008.xls

Probe data (316)

121 Little 25th-June-2008 ISH

UQ_submission_PB_100408_for_submit.xls

GUDMAP_UQ_240608_1620.tar.gz

High and Low Resolution (181)
120 Little 24th-June-2008 ISH

UQ_submission_PB_280408_for_submit.xls

GUDMAP_UQ_230608_1142.tar.gz

High and Low Resolution (84)
119 Gaido 15th-May-2008 IHC

Gudmap_Gaido_IHC_150508_0200_generic_v1.xls
Gudmap_Gaido_IHC_150508_0200.zip

High Resolution (3)

118 Little 2nd-May-2008 ISH

UQ_submission_PB_170108_for_submit.xls

GUDMAP_UQ_020508_1151.tar.gz

High and Low Resolution (14)
117 Little 1st-May-2008 ISH

UQ_submission_PB_110408_for_submit.xls

GUDMAP_UQ_300408_1441.tar.gz_partaa
GUDMAP_UQ_300408_1441.tar.gz_partab

High and Low Resolution (93)


Refer to the README in the link to create an archive from the files.
116 Little 30th-April-2008 ISH

UQ_submission_PB_160408_for_submit.xls

GUDMAP_UQ_300408_1134.tar.gz_partaa
GUDMAP_UQ_300408_1134.tar.gz_partab
GUDMAP_UQ_300408_1134.tar.gz_partac

High and Low Resolution (53)


Refer to the README in the link to create an archive from the files.
115 Little 16th-April-2008 ISH

UQ_submission_PB_230108_for_submit.xls

GUDMAP_UQ_150408_1613.tar.gz_partaa
GUDMAP_UQ_150408_1613.tar.gz_partab
GUDMAP_UQ_150408_1613.tar.gz_partac

High Resolution (89)


Refer to the README in the link to create an archive from the files.
114 Little 8th-April-2008 ISH

UQ_submission_PB_290208_for_submit_USE.xls

GUDMAP_UQ_080408_1504.tar.gz_partaa
GUDMAP_UQ_080408_1504.tar.gz_partab_retry
GUDMAP_UQ_080408_1504.tar.gz_partac_retry

High Resolution (92)


Refer to the README in the link to create an archive from the files.
113 Potter 11th-April-2008 Microarray

GUDMAP_Potterlab_041008_1500.zip
041008_GUDMAP_submission.xls
SSPASSOC5.xls

microarray (2)

112 McMahon 27th-March-2008 ISH

images.zip
A6_A12_A17_192MTFs_march_08_JB.xls

Low Resolution (118) Collated from archives 6, 12 and 17

111 McMahon 25th-March-2008 ISH

GUDMAP_HU_240308_1324.tar.gz
GUDMAP_HU_250308_2213.tar.gz
GUDMAP_MCMAHON_240308_1.xls

Low Resolution TS23 (41)

GUDMAP_HU_250308_2213.tar.gz is a supplementary file containing images and genbank probe sequence files

110 McMahon 11th-March-2008 ISH

GUDMAP_MCMAHON_110308_2125.tgz
GUDMAP_MCMAHON_110308_1.xls

Low Resolution TS23 (88)

109 Gaido 3rd-March-2008 ISH

Gudmap_Gaido_FISH_030308_1030_generic_v1.zip
GUDMAP_GAIDO_FISH_030308_generic_v1.xls

High Resolution (7)

108 Little 27th-Feb-2008 ISH

Archive_107_Image_Batch_2_220208_parta.tar.gz
Archive_107_Image_Batch_2_220208_parta_1
Archive_107_Image_Batch_2_220208_part_2

High Resolution

Following images of archive 107
107 Little 8th-Feb-2008 ISH

ImagesForJaneArmstrong.zip
UQ_submission_PB_261107_for_submit.xls

High Resolution (84)

More images to follow
106 Lessard 6th-Feb-2008 Microarray

GUDMAP_LESSARD_060208_1336.zip
NB_LCM_blad_assoc_NEM.xls
NB_LCM_BLADDER_TISSUE_microarray_spreadsheet_NEM.xls

Bladder (9)

105 Lessard 6th-Feb-2008 Microarray

GUDMAP_LESSARD_060208_1334.zip
NB_sort_bladcell_assoc_NEM.xls
NB_SORTED_CELLS_BLADDER_microarray_spreadsheet_NEM.xls

Bladder (6)

104 Southard-Smith 1st-Feb-2008 Transgenic

GUDMAP_MS2_010208_1518.tar.gz
reporter_generic_010208.xls

Low Resolution (10)

103 Gaido 1st-Feb-2008 ISH

GUDMAP_GAIDO_FISH_010208_generic_v1.zip
GUDMAP_GAIDO_FISH_010208_generic_v1.xls

High Resolution (27)

102 Little 31st-Jan-2008 ISH

GUDMAP_UQ_310108_1518.tar.gz

UQ_submission_PB_100108_for_submit.xls

High and Low Resolution tif (24)
101 Little 25th-Jan-2008 ISH

UQ_submission_PB_SISHproximal_for_submit.xls

GUDMAP_UQ_250108_1236.tar.gz_partaa
GUDMAP_UQ_250108_1236.tar.gz_partab
GUDMAP_UQ_250108_1236.tar.gz_partac

High and Low Resolution tif (60)

Refer to the README in the link to create an archive from the files.
100 Little 30th-Jan-2008 ISH

GUDMAP_UQ_300108_1442.tar.gz

UQ_submission_240108_for_submit.xls

High and Low Resolution tif (19)
99 Little 2nd-Nov-2007 ISH

UQ_submission_PB_161007_forsubmit.xls

UQ_submission_PB_161007_images_tiff.tar.gz_part_aa
UQ_submission_PB_161007_images_tiff.tar.gz_part_ab
UQ_submission_PB_161007_images_tiff.tar.gz_part_ac

High and Low Resolution tif (48)

See also archive 91

Refer to the README in the link to create an archive from the files.
98 Little 22nd-Jan-2008 ISH

GUDMAP_UQ_220108_1624.tar.gzaa
GUDMAP_UQ_220108_1624.tar.gzab
UQ_submission_PB_110108_for_submit.xls

High and Low Resolution (68)

Refer to the README in the link to create an archive from the files.

97 Little 21st-Jan-2008 ISH

UQ_submission_PB_040707_RVtif_for_submit.xls
GUDMAP_UQ_210108_1529_2.tar.gz

High and Low Resolution (17)

96 Gaido 22nd-Jan-2008 ISH

GUDMAP_GAIDO_220108_0830_generic_v1.zip
GUDMAP_GAIDO_FISH_220108_0830_generic_v1.xls

High Resolution (2)
95 Little 17th-Jan-2008 ISH

GUDMAP_UQ_170108_1414.tar.gz
UQ_submission_PB_040707_RVjpg_for_submit.xls

High and Low Resolution (16)

94 Gaido 18th-Dec-2007 ISH

GUDMAP_GAIDO_FISH_181207_1100.zip
GUDMAP_GAIDO_FISH_181207_1100_generic_v1.xls

High Resolution (7)

93 Little 28th-Nov-2007 ISH

GUDMAP_UQ_281107_1415.tar.gz (1.6GB)
UQ_submission_PB_191107_for_submit.xls

High and Low Resolution (48)

92 Gaido 20th-Nov-2007 ISH

GUDMAP_GAIDO_FISH_201107_1030_generic_v1.xls
GUDMAP_GAID_FISH_201107_1030_generic_v1.zip

High Resolution (3)

91 Little 2nd-Nov-2007 ISH

UQ_submission_PB_161007_forsubmit.xls

UQ_submission_PB_161007_images_jpg.tar.gz

High and Low Resolution jpg (60)

See also archive 99

Refer to the README in the link to create an archive from the files.
90 Gaido 16th-Oct-2007 ISH

GUDMAP_GAIDO_ISH_161007_1100.zip
GUDMAP_GAIDO_ISH_161007_1100_v11.xls

High Resolution (5)
89 Gaido 10th-Oct-2007 ISH

GUDMAP_GAIDO_091007_0230_v11.zip
GUDMAP_GAIDO_ISH_091007_0230_v11.xls

High Resolution (3)
88 Gaido 9th-Oct-2007 ISH

GUDMAP_GAIDO_ISH_081007_0930_v11_Part_1.zip
GUDMAP_GAIDO_ISH_081007_1000_v11_part_2.zip
GUDMAP_GAIDO_081007_0800_v11_part_1.xls
GUDMAP_GAIDO_081007_0830_v11_part_2.xls

High Resolution (34)

87 Gaido 15th-Aug-2007 ISH

GUDMAP_GAIDO_150807_0900_v11.zip
GUDMAP_GAIDO_150807_0900_v11.xls

High Resolution (18)

86 Little 7th-Aug-2007 ISH

GUDMAP_UQ_060807_1533.tar.gz
UQ_submission_PB_270607_for_for_submission.xls

High and Low Resolution (68)

85 Gaido 30th-July-2007 ISH

GUDMAP_GAIDO_300707_0630_v11.zip
GUDMAP_GAIDO_300707_0630_v11.xls

High Resolution (6)

84 McMahon 24rd-July-2007 ISH

GUDMAP_MCMAHON_230707_1524.zip
MCMAHON_resubmission.xls

Resubmitted File: Archive84-RESUBMITwFix.xls

Low Resolution (354)

83 Little 24th-July-2007 ISH

GUDMAP_UQ_180707_1535.tar.gz
UQ_submission_PB_070607_for_submission.xls

High and Low Resolution (56)

82 Little 23rd-July-2007 ISH

GUDMAP_UQ_230707_1157.tar.gz
UQ_submission_PB_050707_for_submit.xls

High and Low Resolution (9) - including 2 explants
81 Little 28th-June-2007 ISH

probe_images.zip
UQ_probe_v11_230507_for_submit.xls

High and Low Resolution (4)

80 Little 28-June-2007 IHC

antibody_images.zip
UQ_antibody_v11_230507_for_submit.xls

High and Low Resolution (9)

79 Gaido 22nd-June-2007 ISH

GUDMAP_GAIDO_220607_0830_v11.zip
GUDMAP_GAIDO_220607_0830_v11.xls

High Resolution (30)

78 Little 14th-June-2007 ISH

GUDMAP_UQ_140607_1520.tar.gz
UQ_submission_080507_for_submit.xls

High and Low Resolution (73)

77 Potter 30th-May-2007 Microarray

GUDMAP_Potterlab_053107_120.zip
053007_GUDMAP_submission.xls
SSPASSOC4.xls

TS23 peripheral blasterma (3)

76 Little 30th-May-2007 ISH

GUDMAP_UQ_300507_1219.tar.gz
UQ_submission_150307_for_submit.xls

High and Low Resolution (65)

75 Little 25th-May-2007 ISH

GUDMAP_UQ_250507_1355.tar.gz
UQ_submission_190407_for_submit.xls

High and Low Resolution (65)

74 Gaido 22nd-May-2007 ISH

GUDMAP_GAIDO_220507_0100_v11.zip
GUDMAP_GAIDO_220507_0100_v11.xls

High Resolution (4)

73 Potter 22nd-May-2007 Microarray

GUDMAP_Potterlab_051407_223.zip
051407_GUDMAP_submission.xls
SSPASSOC3.xls

Distal Tubule and Collecting Duct (4)

72 Lessard 11th-May-2007 Microarray

GTE14spreadNEM.xls
GTE14assocNEM.xls
GUDMAP_Lessard_080507_0946.zip

Biological replicates for mouse genital tubercle (3)

71 Lessard 8th-May-2007 Microarray

Ad_Uret_micro_spread_JCS.xls
Ad_Uret_micro_assoc_JCS.xls
GUDMAP_Lessard_040507_1200.zip

Adult ureters from the SMGA/EGFP mice (4)

70 Little 5th-April-2007 ISH

GUDMAP_UQ_050407_1250.tar.gz
UQ_submission_010307_for_submit.xls

High and Low Resolution (49)

69 Little 13th-April-2007 ISH

GUDMAP_UQ_130407_0919.tar.gz
UQ_submission_archive22_for_submit.xls

High and Low Resolution (16)
Replaces archive 22

68 Little 4th-April-2007 ISH

GUDMAP_UQ_040407_1242.tar.gz
UQ_submission_archive23_for_sumbit.xls

High and Low Resolution (24)
Replaces archive 23

67 Little 4th-April-2007 ISH

GUDMAP_UQ_040407_0944.tar.gz
UQ_submission_archive14_for_submit.xls

High and Low Resolution (15)
Replaces archive 14

66 Gaido 22nd-March-2007 ISH

Gaido_submission_FISH_v8_1a.xls
GUDMAP_GAIDO_220307_1050.zip

High Resolution (2)

65 Little 14th-March-2007 ISH

GUDMAP_UQ_140307_1505.tar.gz
UQ_submission_160207_for_submit.xls

Mixed Resolution (87)

64 Little 27th-Feb-2007 ISH

GUDMAP_UQ_270207_1507.tar.gz
UQ_submission_220107_for_submit.xls

High Resolution Data (85)

63 Gaido 22nd-Feb-2007 ISH

GUDMAP_GAIDO_ISH_Controls_220207_1345.zip
Gaido_submission_ISH_controls_v8_1a.xls

Controls (3)

62 Gaido 22nd-Feb-2007 ISH

Gaido_submission_ISH_v8_1a_UPDATE.xls
GUDMAP_GAIDO_220207_1100.zip

High Resolution Data (11)

61 Gaido 24th-Jan-2007 Microarray

Ovary_Day_to_day.xls
Ovary_sig_gd11.xls
ovary_v_testis.xls
OvaryMicroarraySummary.doc
Significant Genes_testes_vday11.xls
testes_cluster.xls
testes_day_to_day.xls

Gene Lists (7 files)

60 Little 8th-Feb-2007 ISH

GUDMAP_UQ_080207_1615.tar.gz
UQ_submission_120107_for_submission.xls

High and Low Resolution Data (123)
59 Little 8th-Feb-2007 ISH

GUDMAP_UQ_080207_1608.tar.gz
UQ_submission_301106_for_submission.xls

High and Low Resolution Data (46)

58 Lessard 31st-Jan-2007 Microarray

GUDMAP_Lessard_300107_1326.zip
day1ureter_spread_JCS.xls
day1ureter_assoc_JCS.xls

Postnatal day 1 ureter (4)

57 HGU 11th-Jan-2007 Dumps

Gudmap_Array_Output_xxx.txt
Gudmap_ISH_Output_xxx.txt

Latest dumps from the GUDMAP database
56 McMahon 15th-Dec-2006 Microarray

GUDMAP_MCMAHON_251106_0933.zip
Valerius_McMahon_arraymetadata_231106.xls
Wnt4_430_suppfiles.xls

4 submissions
55 Little 6th-Dec-2006 ISH

UQ_submission_131106_for_submit.xls
images.tar.gz

High Resolution Data (49)
54 Little 6th-Dec-2006 ISH

UQ_submission_061106_for_submit.xls
images.tar.gz

High Resolution Data (86)
53 Little 6th-Dec-2006 ISH

UQ_submission_archive25b_for_submit.xls
images.tar.gz

80 submissions resubmitted for archive 25

52 Lessard 17th-Nov-2006 Microarray

BLD_microarray_assoc_JCS.xls
BLD_microarray_spreadsheet_.xls
GUDMAP_LESSARD_171106_1400.zip

Entered in public DB.

7 submissions. Expression profiles between pnd 1 and adult bladders
51 Gaido 14th-Nov-2006 ISH

all_present_10_06.1.xls
Gaido_all_present_list_061006_1550.zip

Entered in public DB.

7 submissions

50 Potter 9th-Nov-2006 Microarray

GUDMAP_Potterlab_110806_1423.tgz
GUDMAP_submission_November.xls
SSPASSOC2.xls

Entered in public DB.

11 submissions
49 Little 3rd-Nov-2006 ISH

UQ_submission_archive13_rows31to116_submission.xls
GUDMAP_UQ_021106_1627.tar.gz

Entered in public DB.

52 submissions resubmitted from the original 31-116 rows of archive 13

48 Little 3rd-Nov-2006 ISH

Archive13_rows2to30_UQ_resubmission.xls

Resubmission for Archive 43 with SubmissionID amended

47 McMahon 3rd-Nov-2006 Microarray

Valerius_McMahon_arraymetadata_011106.xls

Entered in public DB.

Spreadsheet relating to archives 7, 8 and 9

46 Gaido 3rd-Nov-2006 Microarray

all_present_10_06.1.xls

Example analysis files and accompanying narrative
45 Lessard 27th-Oct-2006 Microarray

web_narrative_modified.doc
web_narrative.doc
e14RMA_BladvsUreth.xls
e14_RMA_ANOVA.xls
ACTG2_Like_sorted.xls

Example analysis files and accompanying narrative
44 Lessard 23rd-Oct-2006 Microarray

Summary of e14 analysis.doc
e14RMABLADvsUGSl2.xls
e14RMABLADvsUGSl1.xls
e14RMAbladvsUGS.xls

Example analysis files comparing e14 bladder compartment to the e14 UGS compartment.

43 Little 18th-Oct-2006 ISH

GUDMAP_UQ_181006_1732.tar.gz

Archive13_rows2to30_UQ_submission.xls

Entered in public DB.

25 submissions resubmitted from the original 2-30 rows of archive 13. See archive 48 for resubmission.
42 Little 18th-Oct-2006 ISH

GUDMAP_UQ_181006_1724.tar.gz

UQ_submission_16_10_06_resubmission.xls

Entered in public DB.

High Resolution Data (25)

41 Potter 17th-Oct-2006 Microarray

GUDMAP_Potterlab_Pairwise_101706_1400.zip

met_mes_vs_renal_ves.xls
Potter_data_tutorial.doc
renal_ves_ vs_S_shaped.xls
S_shaped_vs_glomerulus.xls
S_shaped_vs_prox.xls

Pairwise comparisons and tutorial
40 Lessard 6th-October-2006 Microarray

E14_microarray_assoc_JCS.xls

E14_microarray_spread_ECF1E.xls

GUDMAP_Lessard_061006_0840.zip

Entered in public DB.

Bladder, urogenital sinus, and urethra regions from embryonic day 14 SMGA/EGFP animals were microdissected and total RNA isolated for gene expression analysis using the Affymetrix MOE430 microarray chip.
39 Gaido 5th-Oct-2006 ISH

Gaido_Submission_ISH_v8.xls

GUDMAP_Gaido_051006_1300.zip

Entered in public DB.

Hi Resolution Data (15). This replaces ftp index: 34

38 Potter 4th-Oct-2006 Microarray

GUDMAP_Potterlab_110806_1400.tgz

PotterlabNewMicroarraySubmission.xls

SSPASSOC1100406.xls

Entered in public DB.

Gene expression profiles of components of the developing kidney

This replaces ftp index: 29

Updated filenames resubmitted 9th November 2006

37 submissions
37 Little 18th-Sep_2006 ISH

GUDMAP_LITTLE_JUNE06_SUBMISSIONS.xls

GUDMAP_LITTLE_180906_1239.tar.gz

High Resolution Data (99)
36 HGU 22nd_Nov-2006 Documents

submissionDocs_v5.3.zip

Instructions, templates, examples and helps for submissions. The latest documentation is in the zip file in the 'current' directory

Refer to link at the top of the page for all helps and documentation.

35 Little 11-Aug-2006 PDF

GUDMAPontologyFigures.zip

Ontology figures. 5 pdf files and 1 doc

34 Gaido 08-Aug-2006 ISH

ISH_Gaido_submission2.xls

images.zip

High Resolution Data (15)

Superceded by archive 39
33 Little 04-Aug-2006 ISH

missing_images_July13_2006.zip

Images missing from archive 13 and 16

32 Gaido 12-July-2006 ISH

ISH_Gaido_submission.xls

ISH_Gaido_images_120706.zip

High Resolution Data (15)

Superceded by archive 34
31 McMahon 10-July-2006 ISH

SISH_submission.xls

SISHImages.zip

94 High Resolution Data submissions. 2 submissions have been retracted by McMahon lab due to irregularities with probe sequences.
30 McMahon 10-July-2006 ISH

MSRsubmissionBuild2.xls

MSRImages.zip

Low Resolution Data. 90 MSR genes submitted, male and female data in same submission. Curated to have 179 single sex submissions.

29 Potter 26-Jun_2006 Microarray

Eric_Potter_MetadataMain_edit.xls

GUDMAP_stevepotter_062606.zip

37 CEL and associated files

Superceded by archive 38

28 Gaido 22-June_06  

Lehmann_20chips_Ovary_6June06.xls

Gaido_June22_2006.zip

Entered in public DB.

Ovary (19 CEL files)

27 Gaido 09-June-06 Microarray

Lehmann_16chips_Epi_25May06.xls

Entered in public DB.

Epididymus (16 CEL files)

26 Little 09-June-06 ISH

UQ_GUDMAP_submissions_May_06.xls

UQ_GUDMAP_submissions_May_06_images.zip

High Resolution data

25 Little 04-May-06 ISH

GUDMAP_upload_plates5_and_6_080506_for_submit.xls

BIG_Tecan_data_08_05_06_for_submit.xls

SISH image zips

 

High Resolution data

See Archive 53 for resubmissions

24 Little 04-May-06 ISH

pre-2005_EMAGE_entries_080506_for_submit.xls

pre-2005_EMAGE.zip

Reannotated EMAGE local database

23 Little 13-Apr-06 ISH

UQ_SUBMISSION_31_03_06_revised.xls

WMISH image zips

SISH image zips

Spreadsheet replaces the one from 31st March.

High Resolution data

22 Little 13-Apr-06 ISH

pre-2005_EMAGE_entries_030406_for_submit.xls

UQ_GUDMAP_SUBMISSION_13_04_06.zip

Reannotated EMAGE local database

21 Little 31-Mar-06 ISH

BIG Tecan data backup from 20.03.06_final.xls

Metadata for forthcoming images
20 Gaido 16-Mar-06 Microarray

21 CEL files. TXT files received 03-Apr-06

Entered in public DB.

Chip - Mouse 230_2; Tissue - Testes

19 Lessard 03-Mar-06 Microarray

12 CEL files. Resubmitted with full data set 03-Apr-06

Entered in public DB.

Day 1 Bladder
18 Potter 15-Feb-06 Microarray

E11.5 data, E12.5 renal vesicles, E15.5 data etc..

CEL file examples, MIAME documents. Superceded by archive 38

17 McMahon 6-Feb-06 ISH update

GUDMAP_MCMAHON_060206_0121.zip

 

TS23 Extra-renal LR anotation for MTFs submitted in archive 6 and 12. Also, see archives 17 and 112.
16 Little 3-Feb-06 ISH

BIG_Tecan_data_from_30.01.06_fixed_remaining.xls

Updates to 2-Feb-06 entries

  
15 Little 2-Feb-06 ISH

Suwarni's GUDMAP entries 2B sumbitted.xls

Suwarni's_annotated_images.zip

Need to contact submitters about problems with anotation column (cannot use levels of expression). Also explant data will be archived until interface is capable of accepting data.

106 submissions for TS15 to 21 (+ several explants)
14 Little 2-Feb-06 ISH

Mathieu's GUDMAP entries.xls

Mathieu's_annotated_images.zip

Need to contact submitters about problems with anotation column (cannot use levels of expression). Also explant data will be archived until interface is capable of accepting data.

23 submissions for TS17 to 20 (+ 1 explant)
13 Little 2-Feb-06 ISH

Images are in the following zip files:

Cadherin11.zip
CD24.zip
Crystallin mu.zip
IHC 250106.zip
Scube1.zip
Scube3.zip
SISH 021105.zip
SISH 201005.zip
SISH 251005.zip
SISH 271005.zip
SISH 281105.zip
WMISH 030106.zip
WMISH 100106.zip
WMISH 180106.zip
WMISH 231105.zip
WMISH 301105.zip

BIG_Tecan_data_from_30.01.06_fixed.xls

Need to contact submitters about problems with anotation column (cannot use levels of expression). Also explant data will be archived until interface is capable of accepting data.

168 submissions for TS15 to adult (including explants)

See archives 43, 48 and 49 for resubmissions

 
12 McMahon Jan-06 ISH update

MCMAHON_imageUpdate.zip

MCMAHON_May11_2005RENAMED.zip

MTFsequences.zip

Image updates and sequence files.

Received update image files for the MTFs submitted in archive 6. Also 1534 MTF sequence files. Also, see archives 17 and 112.
11 McMahon Jan-06 ISH

GUDMAP_MCMAHON_200106.zip

 

91 MTFs, TS27 vibratome, HR anotation. 1 submission has been retracted by McMahon lab due to irregularities with probe sequences.
10 McMahon Jan-06 ISH

GUDMAP_MCMAHON_200106.zip

Put into public DB

164 MSR clones, TS23 complete LR anotation
9 McMahon 01-Dec-05 Microarray

GUDMAP_MCMAHON_011205_1057.zip

Entered in public DB.

12 txt files U74 Platform. Output from Rossetta Resolver

Supplementary data found in archive 47
8 McMahon 30-Nov-05 Microarray

GUDMAP_MCMAHON_301105_2215.zip

Entered in public DB.

9 CEL files. MOE430 Affymetrix chip.

Supplementary data found in archive 47
7 McMahon 31-Oct-05 Microarray

GUDMAP_McMahon_arrayCEL_Oct2005.zip

Entered in public DB.

6 CEL files

Supplementary data found in archive 47
6 McMahon 31-Oct-05 ISH

GUDMAP_McMahon_IMAGES_Oct2005.zip

GUDMAP_McMahon_Tables_Oct2005.zip

1718 MTF submisssions (including male and female submissions for individual MTFs). 1589 entered into Public DB (Feb-06). 118 MTF submissions submitted to Public DB (Mar-08, final curated version found in archive 112). 11 MTF submissions have been retracted by McMahon lab due to irregularities with probe sequences.

TS23 LR annotation of renal for 1505 MTFs (includes original 205 MTFs from archives 3 and 4). Data contained in 3 tables and image files. Also, see archives 12, 17 and 112.
5 McMahon Sep-05 Probe info

MTF_Master_050523allJYprobes.xls

Manually generated local probe DB - some probes still need editing (including allocation of MGI numbers and sequence verification).

List of probe details for 1280 MTFs
4 McMahon Jul-05 ISH

050715submission-update.xls

 

LR anotation data for repro + lower urinary for 205 MTFs. These genes were resubmitted as part of Archive 6

3 McMahon Jun-05 ISH

050609Submission.xls

Manually generated local DB of entries and submitted to public DB.

205 MTFs at TS23 (images + LR anotation of renal) These genes were resubmitted as part of Archive 6

2 McMahon pre-June-05 ISH

Submissions not annotated (ontology was not in place at time of submission).

5 MTFs at TS23, not annotated. Resubmitted as part of Archive 17.
1 Little pre-June-05 ISH

Submissions not annotated (ontology was not in place at time of submission)., EO need to annotate from 'image notes' and have Little lab check through. Some probe details still need editing.

63 genes in whole mount kidneys TS17-21 (151 submissions)