Metanephros

Lower Urinary Tract

Early Genitourinary System

Male Reproductive System

Female Reproductive System

 

 


Tissue Summary: renal medulla (TS22-TS28)


About

renal medulla description

The adult kidney can be divided morphologically into two main parts: the cortex and the medulla. The medulla corresponds to the central or inner part of the kidney and can be further divided into the outer medulla, with outer and inner regions, and the inner medulla (or papilla).



View renal medulla in GUDMAP Development Tutorials


In Situ Data

Link to renal medulla in-situ data for TS17 Link to renal medulla in-situ data for TS18 Link to renal medulla in-situ data for TS19 Link to renal medulla in-situ data for TS20 Link to renal medulla in-situ data for TS21 Link to renal medulla in-situ data for TS22 Link to renal medulla in-situ data for TS23 Link to renal medulla in-situ data for TS24 Link to renal medulla in-situ data for TS25 Link to renal medulla in-situ data for TS26 Link to renal medulla in-situ data for TS27 Link to renal medulla in-situ data for TS28

Validated Anchor/Marker Genes

Anchors (6)

Anchor genes are defined as genes whose expression is restricted to one temporospatial anatomical compartment. These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Gene SymbolGene MGI IDAnchor OfStageAlso Marker ofGUDMAP IDReference
AI836003 MGI:2146066 medullary collecting duct (EMAP:28063)
TS23GUDMAP:13573
Thiagarajan et al. (2011)
Clmn MGI:2136957 medullary collecting duct (EMAP:28063)
TS23GUDMAP:13648
Thiagarajan et al. (2011)
Fam129a MGI:2137237 medullary collecting duct (EMAP:28063)
TS23GUDMAP:11305
Thiagarajan et al. (2011)
Gsdmc4 MGI:1921798 medullary collecting duct (EMAP:28063)
TS23GUDMAP:11309
Thiagarajan et al. (2011)
Umod MGI:102674 immature loop of Henle (EMAP:30864)
TS23renal proximal convoluted tubule (EMAP:29502)
distal straight tubule (EMAP:29505)
distal convoluted tubule (EMAP:29508)
loop of Henle, inner medullary portion (EMAP:29583)
thin ascending limb (EMAP:29585)
loop of Henle (EMAP:29666)
distal straight tubule (EMAP:29672)
loop of Henle (EMAP:29680)
premacula segment of distal straight tubule (EMAP:29684)
GUDMAP:9104
Thiagarajan et al. (2011)
Upk3a MGI:98914 medullary collecting duct (EMAP:28063)
TS23pelvic urothelial lining (EMAP:28079)
GUDMAP:9904
Thiagarajan et al. (2011)

 

Markers (20)

Marker genes are defined as genes which display a regional or enriched expression pattern and may be useful in identifying one or more particular temporospatial compartment(s). These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Gene SymbolGene MGI IDMarker OfStageAlso Marker OfGUDMAP IDReference
0610005C13Rik MGI:1918911 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
renal proximal convoluted tubule (EMAP:29502)
renal proximal straight tubule (EMAP:29662)
GUDMAP:13955
Thiagarajan et al. (2011)
2310046K01Rik MGI:1916948 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
GUDMAP:10780
Thiagarajan et al. (2011)
Aadac MGI:1915008 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
GUDMAP:9034
Thiagarajan et al. (2011)
Acaa1b MGI:3605455 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
renal proximal convoluted tubule (EMAP:29502)
segment 2 of proximal tubule (EMAP:29660)
GUDMAP:9040
Thiagarajan et al. (2011)
Aldh1l1 MGI:1340024 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
early distal tubule (EMAP:28009)
GUDMAP:13954
Thiagarajan et al. (2011)
Ambp MGI:88002 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
GUDMAP:13579
Thiagarajan et al. (2011)
Cgref1 MGI:1915817 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
renal proximal convoluted tubule (EMAP:29502)
renal proximal straight tubule (EMAP:29662)
GUDMAP:9173
Thiagarajan et al. (2011)
Cideb MGI:1270844 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
GUDMAP:9166
Thiagarajan et al. (2011)
Clic6 MGI:2146607 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
GUDMAP:9149
Thiagarajan et al. (2011)
Fbp2 MGI:95491 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
GUDMAP:13581
Thiagarajan et al. (2011)
Gpd1 MGI:95679 immature loop of Henle (EMAP:30864)
TS23capillary loop renal corpuscle (EMAP:27909)
maturing renal corpuscle (EMAP:27945)
cortical renal tubule (EMAP:27999)
renal proximal convoluted tubule (EMAP:29502)
GUDMAP:9047
Thiagarajan et al. (2011)
Gyk MGI:106594 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
early distal tubule (EMAP:28009)
renal proximal convoluted tubule (EMAP:29502)
renal proximal straight tubule (EMAP:29662)
GUDMAP:9155
Thiagarajan et al. (2011)
Hdc MGI:96062 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
renal proximal convoluted tubule (EMAP:29502)
GUDMAP:9164
Thiagarajan et al. (2011)
Kcnj1 MGI:1927248 immature loop of Henle (EMAP:30864)
TS23early distal tubule (EMAP:28009)
GUDMAP:20762
Thiagarajan et al. (2011)
Myo15b MGI:2685534 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
GUDMAP:9038
Thiagarajan et al. (2011)
Napsa MGI:109365 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
renal proximal straight tubule (EMAP:29662)
GUDMAP:10917
Thiagarajan et al. (2011)
Pipox MGI:1197006 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
GUDMAP:10786
Thiagarajan et al. (2011)
Ppp1r3c MGI:1858229 medullary collecting duct (EMAP:28063)
TS23cortical collecting duct (EMAP:28132)
GUDMAP:11318
Thiagarajan et al. (2011)
Pter MGI:107372 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
renal proximal convoluted tubule (EMAP:29502)
renal proximal straight tubule (EMAP:29662)
GUDMAP:8210
Thiagarajan et al. (2011)
Serpina10 MGI:2667725 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
GUDMAP:9131
Thiagarajan et al. (2011)
Sigirr MGI:1344402 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
early distal tubule (EMAP:28009)
GUDMAP:10776
Thiagarajan et al. (2011)
Slc23a1 MGI:1341903 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
renal proximal straight tubule (EMAP:29662)
GUDMAP:9176
Thiagarajan et al. (2011)
Slc6a13 MGI:95629 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
GUDMAP:9168
Thiagarajan et al. (2011)
Susd2 MGI:1918983 immature loop of Henle (EMAP:30864)
TS23capillary loop renal corpuscle (EMAP:27909)
maturing renal corpuscle (EMAP:27945)
cortical renal tubule (EMAP:27999)
GUDMAP:9170
Thiagarajan et al. (2011)
Susd3 MGI:1913579 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
GUDMAP:13582
Thiagarajan et al. (2011)
Tmem72 MGI:2442707 immature loop of Henle (EMAP:30864)
TS23early distal tubule (EMAP:28009)
GUDMAP:20769
Thiagarajan et al. (2011)
Ttc36 MGI:2384760 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
GUDMAP:13583
GUDMAP:13704
Thiagarajan et al. (2011)
Ttr MGI:98865 immature loop of Henle (EMAP:30864)
TS23early proximal tubule (EMAP:28005)
renal proximal straight tubule (EMAP:29662)
GUDMAP:11016
Thiagarajan et al. (2011)
Umod MGI:102674 loop of Henle (EMAP:29666)
distal straight tubule (EMAP:29672)
loop of Henle (EMAP:29680)
premacula segment of distal straight tubule (EMAP:29684)
loop of Henle, inner medullary portion (EMAP:29583)
thin ascending limb (EMAP:29585)
TS28renal proximal convoluted tubule (EMAP:29502)
distal straight tubule (EMAP:29505)
distal convoluted tubule (EMAP:29508)
immature loop of Henle (EMAP:30864)
GUDMAP:10911:GUDMAP:10912
Thiagarajan et al. (2011)
Unc5cl MGI:1923839 immature loop of Henle (EMAP:30864)
TS23cortical renal tubule (EMAP:27999)
early proximal tubule (EMAP:28005)
GUDMAP:13938
Thiagarajan et al. (2011)
Upk1b MGI:98912 medullary collecting duct (EMAP:28063)
TS23GUDMAP:13577
Thiagarajan et al. (2011)

 

 

Genelists


Published Genelists

Published genelists from Microarray Analysis. Click on the number of probes to go to heatmap view


List NameDescription EntitiesGenesSubmitted ByRefs
UQ Medullary Collecting Duct E15.5Anchor genes specific to key renal compartments: Medullary Collecting Duct E15.516 probesets15Kylie Georgas, Rathi ThiagarajanThiagarajan et al. (2011)
Medullary Collecting Duct 15.5dpcBrunskill et al.: Ureteric Tip Region 15.5dpc411 probesets303Bruce Aronow, Eric BrunskillBrunskill et al. (2008)
UQ Renal Medullary Interstitium E15.5Anchor genes specific to key renal compartments: Renal Medullary Interstitium E15.549 probesets49Kylie Georgas, Rathi ThiagarajanThiagarajan et al. (2011)

 



Non-Published Genelists

Non-published genelists from Microarray Analysis. Click on the list name or number of probes to go to heatmap view. Microarray Analysis Help.


List NameDescription EntitiesGenesSubmitted ByRefs
kidney_adult_RenalCapsule_100100 probesets100Bruce Aronow
kidney_adult_RenalCapsule_10001000 probesets848Bruce Aronow
kidney_adult_RenalCapsule_200200 probesets196Bruce Aronow
kidney_adult_RenalCapsule_500500 probesets450Bruce Aronow
kidney_adult_RenalCapsule_k1_1006 probesets6Bruce Aronow
kidney_adult_RenalCapsule_k1_1000104 probesets34Bruce Aronow
kidney_adult_RenalCapsule_k1_20036 probesets35Bruce Aronow
kidney_adult_RenalCapsule_k1_500295 probesets255Bruce Aronow
kidney_adult_RenalCapsule_k2_10014 probesets14Bruce Aronow
kidney_adult_RenalCapsule_k2_1000447 probesets391Bruce Aronow
kidney_adult_RenalCapsule_k2_20013 probesets13Bruce Aronow
kidney_adult_RenalCapsule_k2_50033 probesets31Bruce Aronow
kidney_adult_RenalCapsule_k3_1007 probesets7Bruce Aronow
kidney_adult_RenalCapsule_k3_100089 probesets86Bruce Aronow
kidney_adult_RenalCapsule_k3_200117 probesets116Bruce Aronow
kidney_adult_RenalCapsule_k3_50031 probesets31Bruce Aronow
kidney_adult_RenalCapsule_k4_1006 probesets6Bruce Aronow
kidney_adult_RenalCapsule_k4_1000160 probesets149Bruce Aronow
kidney_adult_RenalCapsule_k4_20012 probesets12Bruce Aronow
kidney_adult_RenalCapsule_k4_50084 probesets80Bruce Aronow
kidney_adult_RenMedVasc_Tie2_100100 probesets97Bruce Aronow
kidney_adult_RenMedVasc_Tie2_10001000 probesets920Bruce Aronow
kidney_adult_RenMedVasc_Tie2_200200 probesets195Bruce Aronow
kidney_adult_RenMedVasc_Tie2_500500 probesets458Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k1_10027 probesets26Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k1_100066 probesets66Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k1_20013 probesets13Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k1_50023 probesets23Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k2_10016 probesets16Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k2_1000352 probesets333Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k2_2009 probesets9Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k2_500188 probesets184Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k3_1006 probesets6Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k3_100087 probesets85Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k3_20055 probesets55Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k3_500152 probesets127Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k4_10040 probesets40Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k4_1000270 probesets237Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k4_20047 probesets44Bruce Aronow
kidney_adult_RenMedVasc_Tie2_k4_50027 probesets27Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_100100 probesets88Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_10001000 probesets841Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_200200 probesets175Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_500500 probesets424Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_10014 probesets12Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_1000277 probesets235Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_20024 probesets23Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_50059 probesets53Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_10025 probesets23Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_1000123 probesets108Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_20038 probesets34Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_500113 probesets99Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_1008 probesets8Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_1000204 probesets179Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_20048 probesets45Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_500137 probesets126Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_10031 probesets25Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_1000307 probesets280Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_2008 probesets7Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_50029 probesets27Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_10022 probesets22Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_100089 probesets82Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_20082 probesets73Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_500162 probesets138Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_100100 probesets91Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_10001000 probesets876Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_200200 probesets178Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_500500 probesets450Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k1_10010 probesets9Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k1_1000152 probesets137Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k1_200103 probesets90Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k1_50045 probesets40Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k2_10018 probesets17Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k2_1000384 probesets327Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k2_20017 probesets15Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k2_50042 probesets40Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k3_10010 probesets9Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k3_1000115 probesets106Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k3_20046 probesets45Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k3_500128 probesets123Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k4_10010 probesets8Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k4_1000118 probesets104Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k4_20012 probesets11Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k4_500238 probesets209Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k5_10052 probesets48Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k5_1000231 probesets215Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k5_20022 probesets19Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k5_50047 probesets42Bruce Aronow