- Focus Groups
- Browse > Array
- Browse > Theiler stage
- Browse > Gene
- Browse > In situ
- Browse > Transgenics
Simply click on the focus group you want to use and this should be displayed at the top of the homepage:
All results returned from a browse will be restricted to this subset.
Browsing microarray data by series
Clicking on Browse > Array > Series from the GUDMAP gene expression page gives a list of all microarray series that are available. Clicking on the name of a series (e.g. Gene expression in whole ovary at gd 11, 12, 14, 16, 18 and pnd2) access the series page where a full description is given, along with a list of the individual samples (entries) available. Individual samples can then be accessed by clicking on the GUDMAP sample ID (e.g. GUDMAP:2217).
Clicking on a GEO ID (e.g. GSM120839) links out to the series entry on the GEO (Gene Expression Omnibus) website. The Platform column gives the GEO platform ID, clicking on it links out to the platform entry on the GEO website.
Browsing microarray data by sample
Clicking on Browse > Array > Sample from the GUDMAP gene expression page gives a list of all the microarray samples (entries) available. Samples are accessed by clicking on the relevant ID number in the 'GUDMAP Entry Details' column (e.g. GUDMAP:2217)
Browsing microarray data by platform
Clicking on Browse > Array > Platform from the GUDMAP gene expression page gives a list of all the different microarray platforms used, alongside the number of microarray series conducted on each platform. Clicking on the ID in the GEO ID column will ink out to the platform entry on the GEO website.
Browsing by Theiler stage
Clicking on Browse > Theiler stage from the GUDMAP gene expression page gives a list of all the GUDMAP entries by Theiler stage (TS), from TS17 to TS28. The corresponding age range to each Theiler stage is indicated in the alternate staging column. The user can then choose In situ data or microarray data of the Theiler stage of interest.
Browsing by gene
The GUDMAP database can be browsed by gene names in alphabetic order. For each gene, ISH data are listed for present, not detected or uncertain in situ expressions. The numbers of ISH for each category is indicated. Clicking on this number links to the corresponding GUDMAP entries.
Browsing In-Situ Hydridisation (ISH) and Immunohistochemistry (IHC) Data
There are three options for browsing the In-Situ data in the GUDMAP database :
- Browse > In situ > RNA :
Gives a full list of all ISH entries
- Browse > In situ > Protein :
Gives a full list of all IHC entries
- Browse > In situ > RNA and Protein Gives a full list of all ISH & IHC entries ordered by Gene Symbol.
Browse the GUDMAP database for the mouse strains that have been generated to genetically mark and manipulate particular cell types.