Report Type: Expression Report Date: 01:37PM 10/28/2004 ______________________________________________________________________ Filename: Potter#2_MOE_430_2.CHP Probe Array Type: Mouse430_2 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.200 Scale Factor (SF): 7.405 TGT Value: 1500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 41.52 Std: 0.56 Min: 40.40 Max: 42.90 Noise: Avg: 1.73 Std: 0.08 Min: 1.50 Max: 2.00 Corner+ Avg: 38 Count: 32 Corner- Avg: 8282 Count: 32 Central- Avg: 9855 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 45101 Number Present: 21500 47.7% Number Absent: 22964 50.9% Number Marginal: 637 1.4% Average Signal (P): 4462.7 Average Signal (A): 70.4 Average Signal (M): 316.8 Average Signal (All): 2167.7 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-B-ACTINMUR/M12481 1413.2 P 2257.3 P 15662.2 P 6444.24 11.08 AFFX-GAPDHMUR/M32599 2236.9 P 21696.0 P 49404.4 P 24445.76 22.09 AFFX-TRANSRECMUR/X57349 17.0 A 5.7 A 171.0 P 64.58 10.08 AFFX-PYRUCARBMUR/L09192 220.5 A 217.4 A 1295.4 P 577.81 5.87 AFFX-18SRNAMUR/X00686 200.3 P 684.8 P 1027.3 P 637.47 5.13 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 917.9 P 1448.4 P 772.8 P 1046.36 0.84 AFFX-BIOC 2595.6 P 3361.0 P 2978.34 1.29 AFFX-BIOD 5918.4 P 11728.2 P 8823.30 1.98 AFFX-CRE 20596.0 P 26567.6 P 23581.81 1.29 AFFX-DAP 52.8 A 41.3 A 5.2 A 33.09 0.10 AFFX-LYS 2.4 A 17.4 A 4.2 A 8.01 1.74 AFFX-PHE 4.4 A 7.7 A 63.6 A 25.22 14.33 AFFX-THR 8.1 A 5.5 A 10.4 A 8.01 1.29 AFFX-TRP 45.8 A 6.2 A 6.0 A 19.36 0.13 AFFX-R2-EC-BIOB 1623.2 P 1395.5 P 1406.1 P 1474.91 0.87 AFFX-R2-EC-BIOC 3767.1 P 4944.9 P 4355.98 1.31 AFFX-R2-EC-BIOD 12895.0 P 14755.8 P 13825.40 1.14 AFFX-R2-P1-CRE 35226.3 P 52112.0 P 43669.12 1.48 AFFX-R2-BS-DAP 21.1 A 4.6 A 2.6 A 9.42 0.13 AFFX-R2-BS-LYS 23.8 A 2.3 A 83.5 A 36.52 3.51 AFFX-R2-BS-PHE 2.0 A 7.8 A 45.8 A 18.53 22.41 AFFX-R2-BS-THR 59.4 A 6.2 A 16.7 A 27.42 0.28 ______________________________________________________________________