Report Type: Expression Report Date: 12:01PM 02/11/2005 ______________________________________________________________________ Filename: 1_Potter_020805_Mouse430_2.CHP Probe Array Type: Mouse430_2 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.020 Scale Factor (SF): 26.656 TGT Value: 1500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 37.56 Std: 0.31 Min: 37.00 Max: 38.50 Noise: Avg: 1.22 Std: 0.04 Min: 1.10 Max: 1.40 Corner+ Avg: 38 Count: 32 Corner- Avg: 8633 Count: 32 Central- Avg: 10526 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 45101 Number Present: 16389 36.3% Number Absent: 28160 62.4% Number Marginal: 552 1.2% Average Signal (P): 7422.5 Average Signal (A): 119.0 Average Signal (M): 432.4 Average Signal (All): 2776.8 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-B-ACTINMUR/M12481 716.4 P 844.1 P 7712.9 P 3091.16 10.77 AFFX-GAPDHMUR/M32599 1020.8 P 4571.5 P 40210.8 P 15267.70 39.39 AFFX-TRANSRECMUR/X57349 157.5 A 21.2 A 19.1 A 65.92 0.12 AFFX-PYRUCARBMUR/L09192 319.9 A 103.9 A 20059.7 P 6827.84 62.70 AFFX-18SRNAMUR/X00686 19082.3 P 24055.4 P 25742.7 P 22960.14 1.35 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 5559.6 P 7036.6 P 4354.2 P 5650.13 0.78 AFFX-BIOC 13259.0 P 9046.2 P 11152.61 0.68 AFFX-BIOD 24984.0 P 40012.5 P 32498.26 1.60 AFFX-CRE 84352.9 P 96784.5 P 90568.67 1.15 AFFX-DAP 11.9 A 46.4 A 17.6 A 25.29 1.48 AFFX-LYS 86.6 A 32.9 A 90.5 A 70.02 1.05 AFFX-PHE 11.4 A 18.0 A 39.3 A 22.90 3.46 AFFX-THR 30.8 A 66.5 A 35.1 A 44.12 1.14 AFFX-TRP 137.7 A 13.7 A 39.1 A 63.52 0.28 AFFX-R2-EC-BIOB 6791.6 P 7118.4 P 5636.4 P 6515.49 0.83 AFFX-R2-EC-BIOC 17214.9 P 18847.9 P 18031.42 1.09 AFFX-R2-EC-BIOD 59600.5 P 62551.3 P 61075.89 1.05 AFFX-R2-P1-CRE 133052.1 P 189762.8 P 161407.45 1.43 AFFX-R2-BS-DAP 75.3 A 9.6 A 21.0 A 35.30 0.28 AFFX-R2-BS-LYS 4.3 A 15.1 A 145.8 A 55.03 34.15 AFFX-R2-BS-PHE 5.0 A 94.9 A 34.9 A 44.93 6.98 AFFX-R2-BS-THR 143.2 A 15.7 A 5.3 A 54.75 0.04 ______________________________________________________________________