Report Type: Expression Report Date: 02:57PM 12/13/2004 ______________________________________________________________________ Filename: #4Potter_11_18.CHP Probe Array Type: Mouse430_2 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 0.920 Scale Factor (SF): 24.126 TGT Value: 1500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 32.87 Std: 0.24 Min: 32.60 Max: 33.60 Noise: Avg: 1.03 Std: 0.04 Min: 1.00 Max: 1.10 Corner+ Avg: 49 Count: 32 Corner- Avg: 9638 Count: 32 Central- Avg: 9519 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 45101 Number Present: 17884 39.7% Number Absent: 26486 58.7% Number Marginal: 731 1.6% Average Signal (P): 7738.1 Average Signal (A): 125.2 Average Signal (M): 403.7 Average Signal (All): 3148.5 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-B-ACTINMUR/M12481 847.2 P 1626.4 P 30270.3 P 10914.65 35.73 AFFX-GAPDHMUR/M32599 2512.5 P 7139.8 P 79775.3 P 29809.21 31.75 AFFX-TRANSRECMUR/X57349 15.0 A 7.6 A 337.6 P 120.08 22.47 AFFX-PYRUCARBMUR/L09192 174.4 A 308.1 A 1073.2 P 518.55 6.16 AFFX-18SRNAMUR/X00686 366.0 P 1790.7 P 1872.3 P 1343.01 5.11 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 5888.9 P 9937.4 P 6550.7 P 7459.02 1.11 AFFX-BIOC 12206.6 P 12173.2 P 12189.90 1.00 AFFX-BIOD 39041.2 P 66259.0 P 52650.09 1.70 AFFX-CRE 137014.1 P 147677.4 P 142345.78 1.08 AFFX-DAP 49.0 A 87.5 A 85.2 A 73.89 1.74 AFFX-LYS 10.3 A 13.6 A 79.5 A 34.47 7.73 AFFX-PHE 7.1 A 87.1 A 183.1 A 92.45 25.81 AFFX-THR 29.8 A 53.1 A 29.0 A 37.29 0.97 AFFX-TRP 66.4 A 16.9 A 95.6 A 59.63 1.44 AFFX-R2-EC-BIOB 10804.9 P 10336.0 P 8199.5 P 9780.16 0.76 AFFX-R2-EC-BIOC 16092.7 P 16691.3 P 16391.99 1.04 AFFX-R2-EC-BIOD 80252.6 P 84182.5 P 82217.55 1.05 AFFX-R2-P1-CRE 167107.9 P 228312.6 P 197710.23 1.37 AFFX-R2-BS-DAP 23.4 A 35.6 A 35.3 A 31.45 1.51 AFFX-R2-BS-LYS 42.1 A 10.7 A 99.3 A 50.71 2.36 AFFX-R2-BS-PHE 3.5 A 4.5 A 15.0 A 7.66 4.29 AFFX-R2-BS-THR 57.7 A 179.0 A 13.3 A 83.32 0.23 ______________________________________________________________________