Report Type: Expression Report Date: 12:25PM 02/11/2005 ______________________________________________________________________ Filename: 5_Potter_020805_Mouse430_2.CHP Probe Array Type: Mouse430_2 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 0.950 Scale Factor (SF): 6.709 TGT Value: 1500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 34.01 Std: 0.25 Min: 33.60 Max: 34.90 Noise: Avg: 1.33 Std: 0.04 Min: 1.20 Max: 1.50 Corner+ Avg: 40 Count: 32 Corner- Avg: 8627 Count: 32 Central- Avg: 10586 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 45101 Number Present: 21621 47.9% Number Absent: 22816 50.6% Number Marginal: 664 1.5% Average Signal (P): 4313.6 Average Signal (A): 60.7 Average Signal (M): 178.9 Average Signal (All): 2101.2 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-B-ACTINMUR/M12481 640.4 P 1053.4 P 10408.7 P 4034.18 16.25 AFFX-GAPDHMUR/M32599 3600.5 P 23711.7 P 44025.7 P 23779.32 12.23 AFFX-TRANSRECMUR/X57349 7.3 A 49.5 A 287.6 P 114.81 39.23 AFFX-PYRUCARBMUR/L09192 77.0 A 161.3 A 646.5 P 294.92 8.40 AFFX-18SRNAMUR/X00686 261.2 P 892.8 P 1493.8 P 882.61 5.72 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 908.3 P 1403.5 P 773.0 P 1028.27 0.85 AFFX-BIOC 2315.2 P 2353.7 P 2334.48 1.02 AFFX-BIOD 4446.5 P 8476.8 P 6461.63 1.91 AFFX-CRE 18529.5 P 22338.8 P 20434.12 1.21 AFFX-DAP 21.1 A 26.0 A 35.1 A 27.40 1.67 AFFX-LYS 15.1 A 6.5 A 15.3 A 12.34 1.01 AFFX-PHE 17.9 A 2.3 A 71.7 A 30.63 3.99 AFFX-THR 10.6 A 5.2 A 19.9 A 11.90 1.88 AFFX-TRP 30.6 A 3.6 A 29.0 A 21.07 0.95 AFFX-R2-EC-BIOB 1406.8 P 1244.5 P 1025.7 P 1225.67 0.73 AFFX-R2-EC-BIOC 2921.3 P 3938.9 P 3430.08 1.35 AFFX-R2-EC-BIOD 12502.1 P 12691.6 P 12596.83 1.02 AFFX-R2-P1-CRE 30032.4 P 44359.5 P 37195.93 1.48 AFFX-R2-BS-DAP 9.7 A 2.9 A 9.4 A 7.34 0.98 AFFX-R2-BS-LYS 6.2 A 14.4 A 91.9 P 37.51 14.89 AFFX-R2-BS-PHE 1.3 A 2.0 A 40.1 A 14.44 30.99 AFFX-R2-BS-THR 53.0 P 7.8 A 4.2 A 21.68 0.08 ______________________________________________________________________