#%guid=0000009007-1272532747-1459586484-1856812237-1892230204
#%affymetrix-algorithm-param-apt-engine=ProbesetSummarizeEngine
#%affymetrix-algorithm-param-apt-program-name=apt-probeset-summarize
#%affymetrix-algorithm-param-apt-command-line=apt-probeset-summarize -a rma-sketch -p MoGene-1_0-st-v1.r4.pgf -c MoGene-1_0-st-v1.r4.clf -b MoGene-1_0-st-v1.r4.bgp -m MoGene-1_0-st-v1.r4.mps --qc-probesets MoGene-1_0-st-v1.r4.qcc -o /net/mahost/export/gudmap0/gudmap_archive/ftp/potter/january_2010/potter_070110_c/data/TXT /net/mahost/export/gudmap0/gudmap_archive/ftp/potter/january_2010/potter_070110_c/data/CEL/DUCT_E10_5_1.CEL /net/mahost/export/gudmap0/gudmap_archive/ftp/potter/january_2010/potter_070110_c/data/CEL/DUCT_E10_5_2.CEL /net/mahost/export/gudmap0/gudmap_archive/ftp/potter/january_2010/potter_070110_c/data/CEL/DUCT_E10_5_3.CEL
#%affymetrix-algorithm-param-apt-exec-guid=0000009007-1272532711-0794569152-1412925037-1936745308
#%affymetrix-algorithm-param-apt-analysis-guid=0000009007-1272532729-2029955680-1503490891-0973135049
#%affymetrix-algorithm-param-apt-time-str=Thu Apr 29 10:18:31 2010
#%affymetrix-algorithm-param-apt-version=apt-1.10.0
#%affymetrix-algorithm-param-apt-cvs-id=$Id: apt-probeset-summarize.cpp,v 1.148 2008/06/19 15:13:29 awilli Exp $
#%affymetrix-algorithm-param-apt-free-mem=3203026944
#%affymetrix-algorithm-param-apt-opt-chip-type=MoGene-1_0-st-v1
#%affymetrix-algorithm-param-apt-opt-probe-count=1102500
#%affymetrix-algorithm-param-apt-opt-force=false
#%affymetrix-algorithm-param-apt-opt-block-size=0
#%affymetrix-algorithm-param-apt-opt-mem-usage=0
#%affymetrix-algorithm-param-apt-opt-precision=5
#%affymetrix-algorithm-param-apt-opt-out-dir=/net/mahost/export/gudmap0/gudmap_archive/ftp/potter/january_2010/potter_070110_c/data/TXT
#%affymetrix-algorithm-param-apt-opt-cc-expr-chp-out-dir=
#%affymetrix-algorithm-param-apt-opt-cc-md-chp-out-dir=
#%affymetrix-algorithm-param-apt-opt-xda-chp-out-dir=
#%affymetrix-algorithm-param-apt-opt-cdf-file=
#%affymetrix-algorithm-param-apt-opt-spf-file=
#%affymetrix-algorithm-param-apt-opt-pgf-file=MoGene-1_0-st-v1.r4.pgf
#%affymetrix-algorithm-param-apt-opt-clf-file=MoGene-1_0-st-v1.r4.clf
#%affymetrix-algorithm-param-apt-opt-bgp-file=MoGene-1_0-st-v1.r4.bgp
#%affymetrix-algorithm-param-apt-opt-ps-list-file=
#%affymetrix-algorithm-param-apt-opt-meta-ps-file=MoGene-1_0-st-v1.r4.mps
#%affymetrix-algorithm-param-apt-opt-qc-groups-file=MoGene-1_0-st-v1.r4.qcc
#%affymetrix-algorithm-param-apt-opt-kill-list=
#%affymetrix-algorithm-param-apt-opt-do-ps-names=false
#%affymetrix-algorithm-param-apt-opt-use-disk=true
#%affymetrix-algorithm-param-apt-opt-disk-dir=
#%affymetrix-algorithm-param-apt-opt-diskCache=50
#%affymetrix-algorithm-param-apt-opt-cel-count=3
#%affymetrix-algorithm-param-apt-opt-cel-1=DUCT_E10_5_1.CEL
#%affymetrix-algorithm-param-apt-opt-cel-2=DUCT_E10_5_2.CEL
#%affymetrix-algorithm-param-apt-opt-cel-3=DUCT_E10_5_3.CEL
#%affymetrix-algorithm-param-apt-opt-analysis-name=rma-sketch
#%affymetrix-algorithm-param-apt-opt-set-analysis-name=
#%affymetrix-algorithm-param-apt-opt-analysis-spec=rma-bg,quant-norm.sketch=-1.bioc=true.lowprecision=false.usepm=true.target=0.doavg=false.subsetmd5=c9f3c4de4c97903a1de4f29b2507db79,pm-only,med-polish.FixFeatureEffect=false.expon=false.attenuate=true.l=0.005.h=-1,expr.genotype=false.strand=false.allele-a=false
#%affymetrix-algorithm-param-apt-opt-feat-effect-file=
#%affymetrix-algorithm-param-apt-opt-target-sketch-file=
#%affymetrix-algorithm-param-apt-opt-do-residuals=false
#%affymetrix-algorithm-param-apt-opt-do-feature-effects=false
#%affymetrix-algorithm-param-apt-opt-write-sketch=false
#%affymetrix-algorithm-param-quantification-name=med-polish
#%affymetrix-algorithm-param-quantification-version=1.0
#%affymetrix-algorithm-param-quantification-scale=log2
#%affymetrix-algorithm-param-quantification-type=signal
cel_files	pm_mean	bgrd_mean	bac_spike-AFFX-BioB-3_at	bac_spike-AFFX-CreX-5_at	bac_spike-AFFX-BioB-5_at	bac_spike-AFFX-CreX-3_at	bac_spike-AFFX-BioC-3_at	bac_spike-AFFX-BioB-M_at	bac_spike-AFFX-BioDn-5_at	bac_spike-AFFX-BioC-5_at	bac_spike-AFFX-BioDn-3_at	polya_spike-AFFX-Bs-phe_st	polya_spike-AFFX-Bs-thr_st	polya_spike-AFFX-Bs-lys_st	polya_spike-AFFX-Bs-dap_st	pos_vs_neg_auc	all_probeset_probesets	all_probeset_atoms	all_probeset_mean	all_probeset_stdev	all_probeset_mad_residual_mean	all_probeset_mad_residual_stdev	all_probeset_rle_mean	all_probeset_rle_stdev	bac_spike_probesets	bac_spike_atoms	bac_spike_mean	bac_spike_stdev	bac_spike_mad_residual_mean	bac_spike_mad_residual_stdev	bac_spike_rle_mean	bac_spike_rle_stdev	neg_control_probesets	neg_control_atoms	neg_control_mean	neg_control_stdev	neg_control_mad_residual_mean	neg_control_mad_residual_stdev	neg_control_rle_mean	neg_control_rle_stdev	polya_spike_probesets	polya_spike_atoms	polya_spike_mean	polya_spike_stdev	polya_spike_mad_residual_mean	polya_spike_mad_residual_stdev	polya_spike_rle_mean	polya_spike_rle_stdev	pos_control_probesets	pos_control_atoms	pos_control_mean	pos_control_stdev	pos_control_mad_residual_mean	pos_control_mad_residual_stdev	pos_control_rle_mean	pos_control_rle_stdev
DUCT_E10_5_1.CEL	491.591737	123.312282	10.076645	13.323809	9.564281	13.771866	9.984056	9.885156	11.545933	10.850424	12.747847	3.433619	3.687972	3.433619	3.246625	0.883599	35557	906151	6.088765	2.099886	0.179989	0.167471	0.111059	0.325739	9	180	11.305557	1.612735	0.071074	0.029189	0.282553	0.144349	5222	20185	4.921023	1.930833	0.185392	0.232136	0.382861	0.624924	4	3760	3.450459	0.181226	0.138240	0.014216	0.000000	0.000000	1324	5119	8.360370	2.093413	0.104843	0.149924	0.303988	0.450463
DUCT_E10_5_2.CEL	316.993051	82.241634	10.845989	13.541023	10.148779	13.892889	10.788000	10.627573	12.154936	11.496613	13.031590	3.433619	3.687972	3.433619	3.246625	0.847808	35557	906151	6.132876	2.054382	0.223693	0.178957	0.118565	0.326302	9	180	11.836377	1.377029	0.034871	0.026874	0.248267	0.121120	5222	20185	5.253076	1.942445	0.238078	0.260357	0.395797	0.614438	4	3760	3.450459	0.181226	0.206607	0.024204	0.000000	0.000000	1324	5119	8.228114	2.132618	0.156092	0.198906	0.310456	0.460713
DUCT_E10_5_3.CEL	372.341236	99.220740	10.438753	13.468416	9.887644	13.836325	10.460384	10.303806	11.882748	11.163786	12.851128	3.433619	3.687972	3.433619	3.246625	0.872659	35557	906151	6.098893	2.079482	0.243137	0.203501	0.142615	0.392278	9	180	11.588110	1.482646	0.014897	0.015796	0.000000	0.000000	5222	20185	5.020539	1.933102	0.230357	0.267999	0.438009	0.730869	4	3760	3.450459	0.181226	0.193183	0.020643	0.000000	0.000000	1324	5119	8.287510	2.099319	0.142026	0.193596	0.409183	0.587606