#%guid=0000009146-1267802614-1678884896-1832885997-1395903215
#%affymetrix-algorithm-param-apt-engine=ProbesetSummarizeEngine
#%affymetrix-algorithm-param-apt-program-name=apt-probeset-summarize
#%affymetrix-algorithm-param-apt-command-line=apt-probeset-summarize -a rma-sketch -p MoGene-1_0-st-v1.r4.pgf -c MoGene-1_0-st-v1.r4.clf -b MoGene-1_0-st-v1.r4.bgp -m MoGene-1_0-st-v1.r4.mps --qc-probesets MoGene-1_0-st-v1.r4.qcc -o /net/mahost/export/gudmap0/gudmap_archive/ftp/potter/december_2009/potter_211209/data/TXT /net/mahost/export/gudmap0/gudmap_archive/ftp/potter/december_2009/potter_211209/data/CEL/Adult_Meis_1.CEL /net/mahost/export/gudmap0/gudmap_archive/ftp/potter/december_2009/potter_211209/data/CEL/Adult_Meis_2.CEL /net/mahost/export/gudmap0/gudmap_archive/ftp/potter/december_2009/potter_211209/data/CEL/Adult_Meis_3.CEL
#%affymetrix-algorithm-param-apt-exec-guid=0000009146-1267802568-0840703552-1977048410-1323533947
#%affymetrix-algorithm-param-apt-analysis-guid=0000009146-1267802595-1516011228-0995707979-1806578074
#%affymetrix-algorithm-param-apt-time-str=Fri Mar  5 15:22:48 2010
#%affymetrix-algorithm-param-apt-version=apt-1.10.0
#%affymetrix-algorithm-param-apt-cvs-id=$Id: apt-probeset-summarize.cpp,v 1.148 2008/06/19 15:13:29 awilli Exp $
#%affymetrix-algorithm-param-apt-free-mem=3631325184
#%affymetrix-algorithm-param-apt-opt-chip-type=MoGene-1_0-st-v1
#%affymetrix-algorithm-param-apt-opt-probe-count=1102500
#%affymetrix-algorithm-param-apt-opt-force=false
#%affymetrix-algorithm-param-apt-opt-block-size=0
#%affymetrix-algorithm-param-apt-opt-mem-usage=0
#%affymetrix-algorithm-param-apt-opt-precision=5
#%affymetrix-algorithm-param-apt-opt-out-dir=/net/mahost/export/gudmap0/gudmap_archive/ftp/potter/december_2009/potter_211209/data/TXT
#%affymetrix-algorithm-param-apt-opt-cc-expr-chp-out-dir=
#%affymetrix-algorithm-param-apt-opt-cc-md-chp-out-dir=
#%affymetrix-algorithm-param-apt-opt-xda-chp-out-dir=
#%affymetrix-algorithm-param-apt-opt-cdf-file=
#%affymetrix-algorithm-param-apt-opt-spf-file=
#%affymetrix-algorithm-param-apt-opt-pgf-file=MoGene-1_0-st-v1.r4.pgf
#%affymetrix-algorithm-param-apt-opt-clf-file=MoGene-1_0-st-v1.r4.clf
#%affymetrix-algorithm-param-apt-opt-bgp-file=MoGene-1_0-st-v1.r4.bgp
#%affymetrix-algorithm-param-apt-opt-ps-list-file=
#%affymetrix-algorithm-param-apt-opt-meta-ps-file=MoGene-1_0-st-v1.r4.mps
#%affymetrix-algorithm-param-apt-opt-qc-groups-file=MoGene-1_0-st-v1.r4.qcc
#%affymetrix-algorithm-param-apt-opt-kill-list=
#%affymetrix-algorithm-param-apt-opt-do-ps-names=false
#%affymetrix-algorithm-param-apt-opt-use-disk=true
#%affymetrix-algorithm-param-apt-opt-disk-dir=
#%affymetrix-algorithm-param-apt-opt-diskCache=50
#%affymetrix-algorithm-param-apt-opt-cel-count=3
#%affymetrix-algorithm-param-apt-opt-cel-1=Adult_Meis_1.CEL
#%affymetrix-algorithm-param-apt-opt-cel-2=Adult_Meis_2.CEL
#%affymetrix-algorithm-param-apt-opt-cel-3=Adult_Meis_3.CEL
#%affymetrix-algorithm-param-apt-opt-analysis-name=rma-sketch
#%affymetrix-algorithm-param-apt-opt-set-analysis-name=
#%affymetrix-algorithm-param-apt-opt-analysis-spec=rma-bg,quant-norm.sketch=-1.bioc=true.lowprecision=false.usepm=true.target=0.doavg=false.subsetmd5=c9f3c4de4c97903a1de4f29b2507db79,pm-only,med-polish.FixFeatureEffect=false.expon=false.attenuate=true.l=0.005.h=-1,expr.genotype=false.strand=false.allele-a=false
#%affymetrix-algorithm-param-apt-opt-feat-effect-file=
#%affymetrix-algorithm-param-apt-opt-target-sketch-file=
#%affymetrix-algorithm-param-apt-opt-do-residuals=false
#%affymetrix-algorithm-param-apt-opt-do-feature-effects=false
#%affymetrix-algorithm-param-apt-opt-write-sketch=false
#%affymetrix-algorithm-param-quantification-name=med-polish
#%affymetrix-algorithm-param-quantification-version=1.0
#%affymetrix-algorithm-param-quantification-scale=log2
#%affymetrix-algorithm-param-quantification-type=signal
cel_files	pm_mean	bgrd_mean	bac_spike-AFFX-BioB-3_at	bac_spike-AFFX-CreX-5_at	bac_spike-AFFX-BioB-5_at	bac_spike-AFFX-CreX-3_at	bac_spike-AFFX-BioC-3_at	bac_spike-AFFX-BioB-M_at	bac_spike-AFFX-BioDn-5_at	bac_spike-AFFX-BioC-5_at	bac_spike-AFFX-BioDn-3_at	polya_spike-AFFX-Bs-phe_st	polya_spike-AFFX-Bs-thr_st	polya_spike-AFFX-Bs-lys_st	polya_spike-AFFX-Bs-dap_st	pos_vs_neg_auc	all_probeset_probesets	all_probeset_atoms	all_probeset_mean	all_probeset_stdev	all_probeset_mad_residual_mean	all_probeset_mad_residual_stdev	all_probeset_rle_mean	all_probeset_rle_stdev	bac_spike_probesets	bac_spike_atoms	bac_spike_mean	bac_spike_stdev	bac_spike_mad_residual_mean	bac_spike_mad_residual_stdev	bac_spike_rle_mean	bac_spike_rle_stdev	neg_control_probesets	neg_control_atoms	neg_control_mean	neg_control_stdev	neg_control_mad_residual_mean	neg_control_mad_residual_stdev	neg_control_rle_mean	neg_control_rle_stdev	polya_spike_probesets	polya_spike_atoms	polya_spike_mean	polya_spike_stdev	polya_spike_mad_residual_mean	polya_spike_mad_residual_stdev	polya_spike_rle_mean	polya_spike_rle_stdev	pos_control_probesets	pos_control_atoms	pos_control_mean	pos_control_stdev	pos_control_mad_residual_mean	pos_control_mad_residual_stdev	pos_control_rle_mean	pos_control_rle_stdev
Adult_Meis_1.CEL	733.064910	184.622617	10.452185	13.749945	9.956194	14.099028	10.627729	10.252653	12.369551	11.261703	13.260101	4.620764	5.048281	4.617318	4.531415	0.867608	35557	906151	7.608583	1.905953	0.148422	0.122005	0.098828	0.262303	9	180	11.781010	1.613046	0.024986	0.020078	0.006164	0.014515	5222	20185	6.820200	1.925156	0.152551	0.181468	0.359987	0.505701	4	3760	4.704444	0.232921	0.133433	0.019529	0.000000	0.000000	1324	5119	9.679914	1.667004	0.074136	0.098859	0.208745	0.279295
Adult_Meis_2.CEL	663.091399	169.549076	10.452185	13.706312	9.956194	14.088127	10.627729	10.252653	12.376808	11.279346	13.304363	4.620764	5.048281	4.617318	4.531415	0.849227	35557	906151	7.631467	1.889176	0.107229	0.096251	0.058909	0.171026	9	180	11.782635	1.609288	0.038081	0.041519	0.007580	0.014547	5222	20185	6.996121	1.913509	0.123595	0.147608	0.221284	0.341020	4	3760	4.704444	0.232921	0.095720	0.021376	0.000000	0.000000	1324	5119	9.610260	1.671990	0.072769	0.096230	0.125749	0.183228
Adult_Meis_3.CEL	804.361138	206.888154	10.452185	13.881323	9.898634	14.141876	10.627729	10.270298	12.414880	11.265662	13.415769	4.620764	5.048281	4.617318	4.531415	0.866541	35557	906151	7.622903	1.905542	0.121414	0.101686	0.060073	0.174315	9	180	11.818706	1.667088	0.048516	0.027581	0.044323	0.048606	5222	20185	6.890252	1.879735	0.125722	0.151653	0.213421	0.342258	4	3760	4.704444	0.232921	0.104148	0.018953	0.000000	0.000000	1324	5119	9.679448	1.659878	0.079184	0.096781	0.130361	0.195788