Report Type: Expression Report Date: 11:59AM 11/29/2006 ______________________________________________________________________ Filename: MSREF_MOE430_2.CHP Probe Array Type: Mouse430_2 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.280 Scale Factor (SF): 7.966 TGT Value: 1500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 41.74 Std: 0.25 Min: 40.80 Max: 42.20 Noise: Avg: 1.87 Std: 0.05 Min: 1.70 Max: 2.00 Corner+ Avg: 55 Count: 32 Corner- Avg: 6500 Count: 32 Central- Avg: 7582 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 45101 Number Present: 24342 54.0% Number Absent: 20048 44.5% Number Marginal: 711 1.6% Average Signal (P): 4084.5 Average Signal (A): 131.4 Average Signal (M): 516.5 Average Signal (All): 2271.1 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-b-ActinMur/M12481 19024.6 P 38520.8 P 62273.3 P 39939.55 3.27 AFFX-GapdhMur/M32599 1039.1 P 6607.3 P 20524.2 P 9390.19 19.75 AFFX-TransRecMur/X57349 229.7 P 120.5 P 2050.1 P 800.09 8.93 AFFX-PyruCarbMur/L09192 268.7 A 543.1 P 4574.9 P 1795.56 17.02 AFFX-18SRNAMur/X00686 43049.7 P 101178.4 P 69755.5 P 71327.84 1.62 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BioB 1897.5 P 3470.5 P 2004.4 P 2457.47 1.06 AFFX-BioC 5802.8 P 8507.5 P 7155.11 1.47 AFFX-BioD 13034.7 P 25361.3 P 19198.02 1.95 AFFX-Cre 69241.0 P 78154.8 P 73697.87 1.13 AFFX-Dap 55.1 A 9.5 A 21.5 A 28.69 0.39 AFFX-Lys 1.3 A 38.8 A 54.8 A 31.67 40.88 AFFX-Phe 6.2 A 4.2 A 187.7 A 66.04 30.30 AFFX-Thr 57.8 A 36.0 A 10.7 A 34.84 0.18 AFFX-Trp 9.8 A 4.8 A 3.0 A 5.85 0.31 AFFX-r2-Ec-bioB 3313.0 P 3297.1 P 3009.0 P 3206.34 0.91 AFFX-r2-Ec-bioC 8723.2 P 10694.8 P 9709.03 1.23 AFFX-r2-Ec-bioD 30551.7 P 37540.4 P 34046.05 1.23 AFFX-r2-P1-cre 79636.8 P 105767.1 P 92701.97 1.33 AFFX-r2-Bs-dap 3.9 A 1.7 A 6.8 A 4.14 1.76 AFFX-r2-Bs-lys 3.0 A 34.9 A 28.8 A 22.23 9.69 AFFX-r2-Bs-phe 2.0 A 7.6 A 146.6 A 52.06 72.13 AFFX-r2-Bs-thr 74.6 P 107.5 A 33.8 A 72.01 0.45 ______________________________________________________________________