Report Type: Expression Report Date: 12:24PM 02/01/2008 ______________________________________________________________________ Filename: 2299_Urothelium_Mouse430_2.CHP Probe Array Type: Mouse430_2 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.380 Scale Factor (SF): 3.941 TGT Value: 1500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 43.38 Std: 0.56 Min: 42.40 Max: 45.60 Noise: Avg: 2.31 Std: 0.10 Min: 2.10 Max: 2.70 Corner+ Avg: 181 Count: 32 Corner- Avg: 14097 Count: 32 Central- Avg: 14041 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 45101 Number Present: 23897 53.0% Number Absent: 20495 45.4% Number Marginal: 709 1.6% Average Signal (P): 4085.9 Average Signal (A): 112.8 Average Signal (M): 315.6 Average Signal (All): 2221.1 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-b-ActinMur/M12481 5947.9 P 14861.5 P 31663.6 P 17490.97 5.32 AFFX-GapdhMur/M32599 869.8 P 6114.3 P 20318.5 P 9100.87 23.36 AFFX-TransRecMur/X57349 490.0 P 278.1 P 1959.1 P 909.11 4.00 AFFX-PyruCarbMur/L09192 389.5 A 402.7 A 2407.1 P 1066.45 6.18 AFFX-18SRNAMur/X00686 43008.7 P 73393.4 P 50154.0 P 55518.69 1.17 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BioB 1424.3 P 2403.4 P 1505.8 P 1777.83 1.06 AFFX-BioC 4027.5 P 5677.2 P 4852.34 1.41 AFFX-BioD 8062.9 P 15855.8 P 11959.38 1.97 AFFX-Cre 45467.8 P 54588.7 P 50028.29 1.20 AFFX-Dap 36.8 A 26.2 A 24.4 A 29.12 0.66 AFFX-Lys 8.3 A 43.6 A 33.5 A 28.45 4.06 AFFX-Phe 2.6 A 2.3 A 113.4 A 39.42 43.02 AFFX-Thr 43.7 A 36.8 A 12.9 A 31.12 0.29 AFFX-Trp 36.5 A 7.3 A 30.9 A 24.90 0.85 AFFX-r2-Ec-bioB 3034.7 P 2468.2 P 2385.6 P 2629.48 0.79 AFFX-r2-Ec-bioC 5766.5 P 7558.8 P 6662.64 1.31 AFFX-r2-Ec-bioD 19193.3 P 24071.0 P 21632.16 1.25 AFFX-r2-P1-cre 51313.4 P 69146.2 P 60229.81 1.35 AFFX-r2-Bs-dap 7.0 A 0.8 A 16.2 A 7.99 2.33 AFFX-r2-Bs-lys 16.9 A 16.2 A 53.1 A 28.73 3.15 AFFX-r2-Bs-phe 3.6 A 2.4 A 21.9 A 9.27 6.06 AFFX-r2-Bs-thr 52.7 P 117.3 A 27.6 A 65.86 0.52 ______________________________________________________________________