Report Type: Expression Report Date: 01:27PM 05/16/2008 ______________________________________________________________________ Filename: Mesenchy me2 MOE 430.2.CHP Probe Array Type: Mouse430_2 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.190 Scale Factor (SF): 4.594 TGT Value: 1500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 39.75 Std: 0.74 Min: 37.40 Max: 41.50 Noise: Avg: 2.03 Std: 0.09 Min: 1.80 Max: 2.30 Corner+ Avg: 133 Count: 32 Corner- Avg: 12527 Count: 32 Central- Avg: 13046 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 45101 Number Present: 22932 50.8% Number Absent: 21491 47.7% Number Marginal: 678 1.5% Average Signal (P): 4139.8 Average Signal (A): 80.0 Average Signal (M): 343.8 Average Signal (All): 2148.2 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-b-ActinMur/M12481 20290.6 P 45199.6 P 48085.7 P 37858.63 2.37 AFFX-GapdhMur/M32599 1393.5 P 7981.9 P 19723.2 P 9699.52 14.15 AFFX-TransRecMur/X57349 79.6 P 71.3 A 176.8 P 109.23 2.22 AFFX-PyruCarbMur/L09192 234.1 M 481.7 P 831.0 P 515.59 3.55 AFFX-18SRNAMur/X00686 37204.7 P 70493.2 P 64661.3 P 57453.08 1.74 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BioB 1826.4 P 2777.1 P 1521.5 P 2041.67 0.83 AFFX-BioC 4572.4 P 6247.7 P 5410.03 1.37 AFFX-BioD 9121.1 P 17772.2 P 13446.64 1.95 AFFX-Cre 44897.9 P 48952.5 P 46925.20 1.09 AFFX-Dap 30.7 A 5.8 A 37.4 A 24.59 1.22 AFFX-Lys 1.6 A 7.1 A 21.4 A 10.03 12.98 AFFX-Phe 2.6 A 1.6 A 162.9 M 55.72 62.04 AFFX-Thr 58.7 A 7.8 A 11.1 A 25.85 0.19 AFFX-Trp 56.4 A 4.5 A 7.3 A 22.75 0.13 AFFX-r2-Ec-bioB 3013.2 P 3269.7 P 2663.9 P 2982.29 0.88 AFFX-r2-Ec-bioC 6503.0 P 7744.7 P 7123.88 1.19 AFFX-r2-Ec-bioD 20530.2 P 25336.2 P 22933.17 1.23 AFFX-r2-P1-cre 49385.8 P 64139.5 P 56762.65 1.30 AFFX-r2-Bs-dap 40.2 A 3.3 A 33.7 A 25.74 0.84 AFFX-r2-Bs-lys 3.6 A 13.0 A 55.4 P 23.99 15.60 AFFX-r2-Bs-phe 3.8 A 1.0 A 136.7 M 47.16 36.19 AFFX-r2-Bs-thr 66.9 P 88.5 A 14.7 A 56.69 0.22 ______________________________________________________________________