GUDMAP data archive

 

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Latest database dumps and presentation history (private)

GUDMAP DATABASE
No. Source Lab Date Received Type of data Filename & Status Notes
1 Little pre-June-05 ISH Submissions not annotated (ontology was not in place at time of submission)., EO need to annotate from 'image notes' and have Little lab check through. Some probe details still need editing. 63 genes in whole mount kidneys TS17-21 (151 entries)
2 McMahon pre-June-05 ISH Submissions not annotated (ontology was not in place at time of submission). 5 MTFs at TS23, not annotated. Resubmitted as part of Archive 17.
3 McMahon Jun-05 ISH

050609Submission.xls

Manually generated local DB of entries and submitted to public DB.

205 MTFs at TS23 (images + LR anotation of renal) These genes were resubmitted as part of Archive 6
4 McMahon Jul-05 ISH

050715submission-update.xls

 

LR anotation data for repro + lower urinary for 205 MTFs. These genes were resubmitted as part of Archive 6
5 McMahon Sep-05 Probe info

MTF_Master_050523allJYprobes.xls

Manually generated local probe DB - some probes still need editing (including allocation of MGI numbers and sequence verification).

List of probe details for 1280 MTFs
6 McMahon 31-Oct-05 ISH

GUDMAP_McMahon_IMAGES_Oct2005.zip

GUDMAP_McMahon_Tables_Oct2005.zip

1718 MTF submisssions (including male and female submissions for individual MTFs). 1589 entered into Public DB (Feb-06). 118 MTF submissions submitted to Public DB (Mar-08, final curated version found in archive 112). 11 MTF submissions have been retracted by McMahon lab due to irregularities with probe sequences.

TS23 LR annotation of renal for 1505 MTFs (includes original 205 MTFs from archives 3 and 4). Data contained in 3 tables and image files. Also, see archives 12, 17 and 112.
7 McMahon 31-Oct-05 Microarray

GUDMAP_McMahon_arrayCEL_Oct2005.zip

Entered in public DB.

6 CEL files

Supplementary data found in archive 47

8 McMahon 30-Nov-05 Microarray

GUDMAP_MCMAHON_301105_2215.zip

Entered in public DB.

9 CEL files. MOE430 Affymetrix chip.

Supplementary data found in archive 47

9 McMahon 01-Dec-05 Microarray

GUDMAP_MCMAHON_011205_1057.zip

Entered in public DB.

12 txt files U74 Platform. Output from Rossetta Resolver

Supplementary data found in archive 47

10 McMahon Jan-06 ISH

GUDMAP_MCMAHON_200106.zip

Put into public DB

164 MSR clones, TS23 complete LR anotation
11 McMahon Jan-06 ISH

GUDMAP_MCMAHON_200106.zip

 

91 MTFs, TS27 vibratome, HR anotation. 1 submission has been retracted by McMahon lab due to irregularities with probe sequences.
12 McMahon Jan-06 ISH update

MCMAHON_imageUpdate.zip

MCMAHON_May11_2005RENAMED.zip

MTFsequences.zip

Image updates and sequence files.

Received update image files for the MTFs submitted in archive 6. Also 1534 MTF sequence files. Also, see archives 17 and 112.
13 Little 2-Feb-06 ISH

Images are in the following zip files:

Cadherin11.zip
CD24.zip
Crystallin mu.zip
IHC 250106.zip
Scube1.zip
Scube3.zip
SISH 021105.zip
SISH 201005.zip
SISH 251005.zip
SISH 271005.zip
SISH 281105.zip
WMISH 030106.zip
WMISH 100106.zip
WMISH 180106.zip
WMISH 231105.zip
WMISH 301105.zip

BIG_Tecan_data_from_30.01.06_fixed.xls

Need to contact submitters about problems with anotation column (cannot use levels of expression). Also explant data will be archived until interface is capable of accepting data.

168 entries for TS15 to adult (including explants)

See archives 43 and 49 for resubmissions

 

14 Little 2-Feb-06 ISH

Mathieu's GUDMAP entries.xls

Mathieu's_annotated_images.zip

Need to contact submitters about problems with anotation column (cannot use levels of expression). Also explant data will be archived until interface is capable of accepting data.

23 entries for TS17 to 20 (+ 1 explant)
15 Little 2-Feb-06 ISH

Suwarni's GUDMAP entries 2B sumbitted.xls

Suwarni's_annotated_images.zip

Need to contact submitters about problems with anotation column (cannot use levels of expression). Also explant data will be archived until interface is capable of accepting data.

106 entries for TS15 to 21 (+ several explants)
16 Little 3-Feb-06 ISH

BIG_Tecan_data_from_30.01.06_fixed_remaining.xls

Updates to 2-Feb-06 entries

 
17 McMahon 6-Feb-06 ISH update

GUDMAP_MCMAHON_060206_0121.zip

 

TS23 Extra-renal LR anotation for MTFs submitted in archive 6 and 12. Also, see archives 17 and 112.
18 Potter 15-Feb-06 Microarray E11.5 data, E12.5 renal vesicles, E15.5 data etc.. CEL file examples, MIAME documents. Superceded by archive 38
19 Lessard 03-Mar-06 Microarray

12 CEL files. Resubmitted with full data set 03-Apr-06

Entered in public DB.

Day 1 Bladder
20 Gaido 20-Mar-06 Microarray

21 CEL files. TXT files received 03-Apr-06

Entered in public DB.

Chip - Mouse 230_2; Tissue - Testes
21 Little 31-Mar-06 ISH BIG Tecan data backup from 20.03.06_final.xls Metadata for forthcoming images
22 Little 13-Apr-06 ISH

pre-2005_EMAGE_entries_030406_for_submit.xls

UQ_GUDMAP_SUBMISSION_13_04_06.zip

Reannotated EMAGE local database
23 Little 13-Apr-06 ISH

UQ_SUBMISSION_31_03_06_revised.xls

WMISH image zips

SISH image zips

Spreadsheet replaces the one from 31st March.

High Resolution data

24 Little 04-May-06 ISH

pre-2005_EMAGE_entries_080506_for_submit.xls

pre-2005_EMAGE.zip

Reannotated EMAGE local database
25 Little 04-May-06 ISH

GUDMAP_upload_plates5_and_6_080506_for_submit.xls

BIG_Tecan_data_08_05_06_for_submit.xls

SISH image zips

 

High Resolution data

See Archive 53 for resubmissions

26 Little 09-June-06 ISH

UQ_GUDMAP_submissions_May_06.xls

UQ_GUDMAP_submissions_May_06_images.zip

High Resolution data
27 Gaido 09-June-06 Microarray

Lehmann_16chips_Epi_25May06.xls

Entered in public DB.

Epididymus (16 CEL files)
28 Gaido 22-June_06  

Lehmann_20chips_Ovary_6June06.xls

Gaido_June22_2006.zip

Entered in public DB.

Ovary (19 CEL files)
29 Potter 26-Jun_2006 Microarray

Eric_Potter_MetadataMain_edit.xls

GUDMAP_stevepotter_062606.zip

37 CEL and associated files

Superceded by archive 38
30 McMahon 10-July-2006 ISH

MSRsubmissionBuild2.xls

MSRImages.zip

Low Resolution Data. 90 MSR genes submitted, male and female data in same submission. Curated to have 179 single sex submissions.
31 McMahon 10-July-2006 ISH

SISH_submission.xls

SISHImages.zip

94 High Resolution Data entries. 2 submissions have been retracted by McMahon lab due to irregularities with probe sequences.
32 Gaido 12-July-2006 ISH

ISH_Gaido_submission.xls

ISH_Gaido_images_120706.zip

High Resolution Data (15)

Superceded by archive 34

33 Little 04-Aug-2006 ISH missing_images_July13_2006.zip Images missing from archive 13 and 16
34 Gaido 08-Aug-2006 ISH

ISH_Gaido_submission2.xls

images.zip

High Resolution Data (15)

Superceded by archive 39

35 Little 11-Aug-2006 PDF GUDMAPontologyFigures.zip Ontology figures. 5 pdf files and 1 doc
36 HGU 22nd_Nov-2006 Documents submissionDocs_v5.3.zip

Instructions, templates, examples and helps for submissions. The latest documentation is in the zip file in the 'current' directory

Refer to link at the top of the page for all helps and documentation.

37 Little 18th-Sep_2006 ISH

GUDMAP_LITTLE_JUNE06_SUBMISSIONS.xls

GUDMAP_LITTLE_180906_1239.tar.gz

High Resolution Data (99)
38 Potter 4th-Oct-2006 Microarray

GUDMAP_Potterlab_110806_1400.tgz

PotterlabNewMicroarraySubmission.xls

SSPASSOC1100406.xls

Entered in public DB.

Gene expression profiles of components of the developing kidney

This replaces ftp index: 29

Updated filenames resubmitted 9th November 2006

37 entries

39 Gaido 5th-Oct-2006 ISH

Gaido_Submission_ISH_v8.xls

GUDMAP_Gaido_051006_1300.zip

Entered in public DB.

Hi Resolution Data (15). This replaces ftp index: 34
40 Lessard 6th-October-2006 Microarray

E14_microarray_assoc_JCS.xls

E14_microarray_spread_ECF1E.xls

GUDMAP_Lessard_061006_0840.zip

Entered in public DB.

Bladder, urogenital sinus, and urethra regions from embryonic day 14 SMGA/EGFP animals were microdissected and total RNA isolated for gene expression analysis using the Affymetrix MOE430 microarray chip.
41 Potter 17th-Oct-2006 Microarray

GUDMAP_Potterlab_Pairwise_101706_1400.zip

met_mes_vs_renal_ves.xls
Potter_data_tutorial.doc
renal_ves_ vs_S_shaped.xls
S_shaped_vs_glomerulus.xls
S_shaped_vs_prox.xls

Pairwise comparisons and tutorial
42 Little 18th-Oct-2006 ISH

GUDMAP_UQ_181006_1724.tar.gz

UQ_submission_16_10_06_resubmission.xls

Entered in public DB.

High Resolution Data (25)
43 Little 18th-Oct-2006 ISH

GUDMAP_UQ_181006_1732.tar.gz

Archive13_rows2to30_UQ_submission.xls

Entered in public DB.

25 entries resubmitted from the original 2-30 rows of archive 13
44 Lessard 23rd-Oct-2006 Microarray Summary of e14 analysis.doc
e14RMABLADvsUGSl2.xls
e14RMABLADvsUGSl1.xls
e14RMAbladvsUGS.xls

Example analysis files comparing e14 bladder compartment to the e14 UGS compartment.
45 Lessard 27th-Oct-2006 Microarray web_narrative_modified.doc
web_narrative.doc
e14RMA_BladvsUreth.xls
e14_RMA_ANOVA.xls
ACTG2_Like_sorted.xls

Example analysis files and accompanying narrative
46 Gaido 3rd-Nov-2006 Microarray all_present_10_06.1.xls Example analysis files and accompanying narrative
47 McMahon 3rd-Nov-2006 Microarray

Valerius_McMahon_arraymetadata_011106.xls

Entered in public DB.

Spreadsheet relating to archives 7, 8 and 9
48 Little 3rd-Nov-2006 ISH Archive13_rows2to30_UQ_resubmission.xls Resubmission for Archive 43 with SubmissionID amended
49 Little 3rd-Nov-2006 ISH

UQ_submission_archive13_rows31to116_submission.xls
GUDMAP_UQ_021106_1627.tar.gz

Entered in public DB.

52 entries resubmitted from the original 31-116 rows of archive 13
50 Potter 9th-Nov-2006 Microarray

GUDMAP_Potterlab_110806_1423.tgz
GUDMAP_submission_November.xls
SSPASSOC2.xls

Entered in public DB.

11 entries
51 Gaido 14th-Nov-2006 ISH

all_present_10_06.1.xls
Gaido_all_present_list_061006_1550.zip

Entered in public DB.

7 entries
52 Lessard 17th-Nov-2006 Microarray

BLD_microarray_assoc_JCS.xls
BLD_microarray_spreadsheet_.xls
GUDMAP_LESSARD_171106_1400.zip

Entered in public DB.

7 entries. Expression profiles between pnd 1 and adult bladders
53 Little 6th-Dec-2006 ISH UQ_submission_archive25b_for_submit.xls
images.tar.gz
80 entries resubmitted for archive 25
54 Little 6th-Dec-2006 ISH UQ_submission_061106_for_submit.xls
images.tar.gz
High Resolution Data (86)
55 Little 6th-Dec-2006 ISH UQ_submission_131106_for_submit.xls
images.tar.gz
High Resolution Data (49)
56 McMahon 15th-Dec-2006 Microarray GUDMAP_MCMAHON_251106_0933.zip
Valerius_McMahon_arraymetadata_231106.xls
Wnt4_430_suppfiles.xls
4 entries
57 HGU 11th-Jan-2007 Dumps Gudmap_Array_Output_xxx.txt
Gudmap_ISH_Output_xxx.txt

Latest dumps from the GUDMAP database
58 Lessard 31st-Jan-2007 Microarray GUDMAP_Lessard_300107_1326.zip
day1ureter_spread_JCS.xls
day1ureter_assoc_JCS.xls

Postnatal day 1 ureter (4)
59 Little 8th-Feb-2007 ISH GUDMAP_UQ_080207_1608.tar.gz
UQ_submission_301106_for_submission.xls

High and Low Resolution Data (43)
60 Little 8th-Feb-2007 ISH GUDMAP_UQ_080207_1615.tar.gz
UQ_submission_120107_for_submission.xls

High and Low Resolution Data (123)
61 Gaido 24th-Jan-2007 Microarray Ovary_Day_to_day.xls
Ovary_sig_gd11.xls
ovary_v_testis.xls
OvaryMicroarraySummary.doc
Significant Genes_testes_vday11.xls
testes_cluster.xls
testes_day_to_day.xls

Gene Lists (7 files)
62 Gaido 22nd-Feb-2007 ISH Gaido_submission_ISH_v8_1a_UPDATE.xls
GUDMAP_GAIDO_220207_1100.zip
High Resolution Data (11)
63 Gaido 22nd-Feb-2007 ISH GUDMAP_GAIDO_ISH_Controls_220207_1345.zip
Gaido_submission_ISH_controls_v8_1a.xls

Controls (3)
64 Little 27th-Feb-2007 ISH GUDMAP_UQ_270207_1507.tar.gz
UQ_submission_220107_for_submit.xls

High Resolution Data (85)
65 Little 14th-March-2007 ISH GUDMAP_UQ_140307_1505.tar.gz
UQ_submission_160207_for_submit.xls

Mixed Resolution (87)
66 Gaido 22nd-March-2007 ISH Gaido_submission_FISH_v8_1a.xls
GUDMAP_GAIDO_220307_1050.zip

High Resolution (2)
67 Little 4th-April-2007 ISH GUDMAP_UQ_040407_0944.tar.gz
UQ_submission_archive14_for_submit.xls
High and Low Resolution (15)
Replaces archive 14
68 Little 4th-April-2007 ISH GUDMAP_UQ_040407_1242.tar.gz
UQ_submission_archive23_for_sumbit.xls
High and Low Resolution (24)
Replaces archive 23
69 Little 13th-April-2007 ISH GUDMAP_UQ_130407_0919.tar.gz
UQ_submission_archive22_for_submit.xls

High and Low Resolution (16)
Replaces archive 22
70 Little 5th-April-2007 ISH GUDMAP_UQ_050407_1250.tar.gz
UQ_submission_010307_for_submit.xls
High and Low Resolution (49)
71 Lessard 8th-May-2007 Microarray Ad_Uret_micro_spread_JCS.xls
Ad_Uret_micro_assoc_JCS.xls
GUDMAP_Lessard_040507_1200.zip

Adult ureters from the SMGA/EGFP mice (4)
72 Lessard 11th-May-2007 Microarray GTE14spreadNEM.xls
GTE14assocNEM.xls
GUDMAP_Lessard_080507_0946.zip

Biological replicates for mouse genital tubercle (3)
73 Potter 22nd-May-2007 Microarray GUDMAP_Potterlab_051407_223.zip
051407_GUDMAP_submission.xls
SSPASSOC3.xls

Distal Tubule and Collecting Duct (4)
74 Gaido 22nd-May-2007 ISH GUDMAP_GAIDO_220507_0100_v11.zip
GUDMAP_GAIDO_220507_0100_v11.xls

High Resolution (4)
75 Little 25th-May-2007 ISH GUDMAP_UQ_250507_1355.tar.gz
UQ_submission_190407_for_submit.xls

High and Low Resolution (65)
76 Little 30th-May-2007 ISH GUDMAP_UQ_300507_1219.tar.gz
UQ_submission_150307_for_submit.xls

High and Low Resolution (65)
77 Potter 30th-May-2007 Microarray GUDMAP_Potterlab_053107_120.zip
053007_GUDMAP_submission.xls
SSPASSOC4.xls

TS23 peripheral blasterma (3)
78 Little 14th-June-2007 ISH GUDMAP_UQ_140607_1520.tar.gz
UQ_submission_080507_for_submit.xls

High and Low Resolution (73)
79 Gaido 22nd-June-2007 ISH GUDMAP_GAIDO_220607_0830_v11.zip
GUDMAP_GAIDO_220607_0830_v11.xls

High Resolution (30)
80 Little 28-June-2007 IHC antibody_images.zip
UQ_antibody_v11_230507_for_submit.xls

High and Low Resolution (9)
81 Little 28th-June-2007 ISH probe_images.zip
UQ_probe_v11_230507_for_submit.xls

High and Low Resolution (4)
82 Little 23rd-July-2007 ISH GUDMAP_UQ_230707_1157.tar.gz
UQ_submission_PB_050707_for_submit.xls

High and Low Resolution (9) - including 2 explants
83 Little 24th-July-2007 ISH GUDMAP_UQ_180707_1535.tar.gz
UQ_submission_PB_070607_for_submission.xls

High and Low Resolution (56)
84 McMahon 24rd-July-2007 ISH

GUDMAP_MCMAHON_230707_1524.zip
MCMAHON_resubmission.xls

Resubmitted File: Archive84-RESUBMITwFix.xls

Low Resolution (354)
85 Gaido 30th-July-2007 ISH GUDMAP_GAIDO_300707_0630_v11.zip
GUDMAP_GAIDO_300707_0630_v11.xls

High Resolution (6)
86 Little 7th-Aug-2007 ISH

GUDMAP_UQ_060807_1533.tar.gz
UQ_submission_PB_270607_for_for_submission.xls

High and Low Resolution (68)
87 Gaido 15th-Aug-2007 ISH GUDMAP_GAIDO_150807_0900_v11.zip
GUDMAP_GAIDO_150807_0900_v11.xls

High Resolution (18)

88

 

Gaido 9th-Oct-2007 ISH GUDMAP_GAIDO_ISH_081007_0930_v11_Part_1.zip
GUDMAP_GAIDO_ISH_081007_1000_v11_part_2.zip
GUDMAP_GAIDO_081007_0800_v11_part_1.xls
GUDMAP_GAIDO_081007_0830_v11_part_2.xls

High Resolution (34)
89 Gaido 10th-Oct-2007 ISH GUDMAP_GAIDO_091007_0230_v11.zip
GUDMAP_GAIDO_ISH_091007_0230_v11.xls

High Resolution (3)
90 Gaido 16th-Oct-2007 ISH GUDMAP_GAIDO_ISH_161007_1100.zip
GUDMAP_GAIDO_ISH_161007_1100_v11.xls

High Resolution (5)
91 Little 2nd-Nov-2007 ISH

UQ_submission_PB_161007_forsubmit.xls

UQ_submission_PB_161007_images_jpg.tar.gz

High and Low Resolution jpg (60)

See also archive 99

Refer to the README in the link to create an archive from the files.

92 Gaido 20th-Nov-2007 ISH GUDMAP_GAIDO_FISH_201107_1030_generic_v1.xls
GUDMAP_GAID_FISH_201107_1030_generic_v1.zip

High Resolution (3)
93 Little 28th-Nov-2007 ISH GUDMAP_UQ_281107_1415.tar.gz (1.6GB)
UQ_submission_PB_191107_for_submit.xls

High and Low Resolution (48)
94 Gaido 18th-Dec-2007 ISH GUDMAP_GAIDO_FISH_181207_1100.zip
GUDMAP_GAIDO_FISH_181207_1100_generic_v1.xls

High Resolution (7)
95 Little 17th-Jan-2008 ISH GUDMAP_UQ_170108_1414.tar.gz
UQ_submission_PB_040707_RVjpg_for_submit.xls

High and Low Resolution (16)
96 Gaido 22nd-Jan-2008 ISH GUDMAP_GAIDO_220108_0830_generic_v1.zip
GUDMAP_GAIDO_FISH_220108_0830_generic_v1.xls

High Resolution (2)
97 Little 21st-Jan-2008 ISH UQ_submission_PB_040707_RVtif_for_submit.xls
GUDMAP_UQ_210108_1529_2.tar.gz
High and Low Resolution (17)
98 Little 22nd-Jan-2008 ISH GUDMAP_UQ_220108_1624.tar.gzaa
GUDMAP_UQ_220108_1624.tar.gzab
UQ_submission_PB_110108_for_submit.xls

High and Low Resolution (68)

Refer to the README in the link to create an archive from the files.

99 Little 2nd-Nov-2007 ISH

UQ_submission_PB_161007_forsubmit.xls

UQ_submission_PB_161007_images_tiff.tar.gz_part_aa
UQ_submission_PB_161007_images_tiff.tar.gz_part_ab
UQ_submission_PB_161007_images_tiff.tar.gz_part_ac

High and Low Resolution tif (48)

See also archive 91

Refer to the README in the link to create an archive from the files.

100 Little 30th-Jan-2008 ISH

GUDMAP_UQ_300108_1442.tar.gz

UQ_submission_240108_for_submit.xls
High and Low Resolution tif (19)
101 Little 25th-Jan-2008 ISH

UQ_submission_PB_SISHproximal_for_submit.xls

GUDMAP_UQ_250108_1236.tar.gz_partaa
GUDMAP_UQ_250108_1236.tar.gz_partab
GUDMAP_UQ_250108_1236.tar.gz_partac

High and Low Resolution tif (60)

Refer to the README in the link to create an archive from the files.

102 Little 31st-Jan-2008 ISH

GUDMAP_UQ_310108_1518.tar.gz

UQ_submission_PB_100108_for_submit.xls
High and Low Resolution tif (24)
103 Gaido 1st-Feb-2008 ISH GUDMAP_GAIDO_FISH_010208_generic_v1.zip
GUDMAP_GAIDO_FISH_010208_generic_v1.xls

High Resolution (27)
104 Southard-Smith 1st-Feb-2008 Transgenic GUDMAP_MS2_010208_1518.tar.gz
reporter_generic_010208.xls

Low Resolution (10)
105 Lessard 6th-Feb-2008 Microarray

GUDMAP_LESSARD_060208_1334.zip
NB_sort_bladcell_assoc_NEM.xls
NB_SORTED_CELLS_BLADDER_microarray_spreadsheet_NEM.xls

Bladder (6)
106 Lessard 6th-Feb-2008 Microarray GUDMAP_LESSARD_060208_1336.zip
NB_LCM_blad_assoc_NEM.xls
NB_LCM_BLADDER_TISSUE_microarray_spreadsheet_NEM.xls

Bladder (9)
107 Little 8th-Feb-2008 ISH ImagesForJaneArmstrong.zip
UQ_submission_PB_261107_for_submit.xls

High Resolution (84)

More images to follow

108 Little 27th-Feb-2008 ISH Archive_107_Image_Batch_2_220208_parta.tar.gz
Archive_107_Image_Batch_2_220208_parta_1
Archive_107_Image_Batch_2_220208_part_2

High Resolution

Following images of archive 107

109 Gaido 3rd-March-2008 ISH Gudmap_Gaido_FISH_030308_1030_generic_v1.zip
GUDMAP_GAIDO_FISH_030308_generic_v1.xls
High Resolution (7)
110 McMahon 11th-March-2008 ISH

GUDMAP_MCMAHON_110308_2125.tgz
GUDMAP_MCMAHON_110308_1.xls

Low Resolution & high Resolution TS23 (88)
111 McMahon 25th-March-2008 ISH GUDMAP_HU_240308_1324.tar.gz
GUDMAP_HU_250308_2213.tar.gz
GUDMAP_MCMAHON_240308_1.xls

Low Resolution TS23 (41)

GUDMAP_HU_250308_2213.tar.gz is a supplementary file containing images and genbank probe sequence files

112 McMahon 27th-March-2008 ISH images.zip
A6_A12_A17_192MTFs_march_08_JB.xls

Low Resolution (118) Collated from archives 6, 12 and 17
113 Potter 11th-April-2008 Microarray GUDMAP_Potterlab_041008_1500.zip
041008_GUDMAP_submission.xls
SSPASSOC5.xls
microarray (2)
114 Little 8th-April-2008 ISH UQ_submission_PB_290208_for_submit_USE.xls

GUDMAP_UQ_080408_1504.tar.gz_partaa
GUDMAP_UQ_080408_1504.tar.gz_partab_retry
GUDMAP_UQ_080408_1504.tar.gz_partac_retry

High Resolution (92)


Refer to the README in the link to create an archive from the files.

115 Little 16th-April-2008 ISH

UQ_submission_PB_230108_for_submit.xls

GUDMAP_UQ_150408_1613.tar.gz_partaa
GUDMAP_UQ_150408_1613.tar.gz_partab
GUDMAP_UQ_150408_1613.tar.gz_partac

High Resolution (89)


Refer to the README in the link to create an archive from the files.

116 Little 30th-April-2008 ISH

UQ_submission_PB_160408_for_submit.xls

GUDMAP_UQ_300408_1134.tar.gz_partaa
GUDMAP_UQ_300408_1134.tar.gz_partab
GUDMAP_UQ_300408_1134.tar.gz_partac

High and Low Resolution (53)


Refer to the README in the link to create an archive from the files.

117 Little 1st-May-2008 ISH

UQ_submission_PB_110408_for_submit.xls

GUDMAP_UQ_300408_1441.tar.gz_partaa
GUDMAP_UQ_300408_1441.tar.gz_partab

High and Low Resolution (93)


Refer to the README in the link to create an archive from the files.

118 Little 2nd-May-2008 ISH

UQ_submission_PB_170108_for_submit.xls

GUDMAP_UQ_020508_1151.tar.gz

High and Low Resolution (14)
119 Gaido 15th-May-2008 IHC Gudmap_Gaido_IHC_150508_0200_generic_v1.xls
Gudmap_Gaido_IHC_150508_0200.zip

High Resolution (3)
120 Little 24th-June-2008 ISH

UQ_submission_PB_280408_for_submit.xls

GUDMAP_UQ_230608_1142.tar.gz

High and Low Resolution (84)
121 Little 25th-June-2008 ISH

UQ_submission_PB_100408_for_submit.xls

GUDMAP_UQ_240608_1620.tar.gz

High and Low Resolution (181)
122 McMahon 20th-June-2008 Probe HU-Riken-probes-June20008.xls Probe data (316)
123 McMahon 1st-July-2008 ISH

Plate1A-submit-1-2003.xls

GUDMAP_HU_300608_2236.zip

ISH Low Resolution (48)
124 McMahon 1st-July-2008 ISH

Plate1b-submit.xls

GUDMAP_HU_300608_2317.zip

ISH Low Resolution (48)
125 McMahon 1st-July-2008 ISH Plate2-submit.xls
GUDMAP_HU_010708_0716.zip

ISH Low Resolution (47)
126 McMahon 3rd-July-2008 ISH Plate3a-submit.xls
GUDMAP_HU_020708_1513.zip

ISH Low Resolution (46)
127 McMahon 3rd-July-2008 ISH Plate3b-submit.xls
GUDMAP_HU_020708_1924.zip

ISH Low Resolution (48)
128 McMahon 4th-July-2008 ISH Plate4-submit.xls
GUDMAP_HU_030708_2010.zip

ISH Low Resolution (70)
129 McMahon 5th-July-2008 ISH

Plate5a-submit.xls
GUDMAP_HU_040708_2001.zip

ISH Low Resolution (48)
130 McMahon 6th-July-2008 ISH Plate5b-submit.xls
GUDMAP_HU_050708_1936.zip

ISH Low Resolution (42)
131 McMahon 7th-July-2008 ISH Plate6a-submit2003.xls
GUDMAP_HU_060708_2315.zip

ISH Low Resolution (48)
132 McMahon 8th-July-2008 ISH Plate6b-submit.xls
GUDMAP_HU_070708_1506.zip

ISH Low Resolution (43)
133 McMahon 11th-July-2008 ISH Plate7-submit-ready.xls
GUDMAP_HU_110708_1649.zip

ISH Low Resolution (46)
134 Potter 17th-July-2008 Microarray 071708_GUDMAP_submission.xls
SSPASSOC6.xls
GUDMAP_Potterlab_071708_900.zip

Microarray (3)
135 Little 18th-July-2008 ISH

UQ_submission_PB_220408_for_submit.xls

GUDMAP_UQ_160708_1445_partaa
GUDMAP_UQ_160708_1445_partab
GUDMAP_UQ_160708_1445_partac
GUDMAP_UQ_160708_1445_partad
GUDMAP_UQ_160708_1445_partae
GUDMAP_UQ_160708_1445_partaf

ISH High Resolution (92)
136 Potter 1st-July-2008 Microarray

Hes5_GENSAT_Analysis.zip

GENSAT Analyses plus movies
137 Lessard 21st-August-2008 Microarray

GUDMAP_LESSARD_082108.zip

No description given
138 Potter 26th-August-2008 Microarray GUDMAP_Potterlab_082508_1400.zip No description given. (3) samples
139 Gaido 8th-September-2008 ISH

GUDMAP_GAIDO_FISH_080908_1230.zip

GUDMAP_GAIDO_FISH_080908_generic_V1.xls

ISH High Resolution (3)
140 Gaido 29th-August-2008 Microarray

Gaido_epididymis_allpresent.xls
Gaido_epididymis_compare_daytoday.xls
Gaido_epididymis_compare_wrt_GD12.xls
Gaido_epididymis_goldstandard.xls
Gaido_epididymis_vs_ovary_fcNfdr.xls
Gaido_ovary_allpresent.xls
Gaido_ovary_compare_daytoday.xls
Gaido_ovary_compare_wrtGD11.xls
Gaido_ovary_goldstandard.xls
Gaido_testes_compare_daytoday.xls
Gaido_testes_compare_wrtGD11.xls
Gaido_testes_goldstandard.xls
Gaido_testes_vs_ovary_fcNfdr.xls

all_files.zip

Comparison and Gold Standard data. 13 spreadsheets
141 McMahon 27th-August-2008 ISH

GUDMAP_HU_270808_1555.zip

MS-insitu.xls

ISH Low Res TS23 (14)
142 Little 12th-September-2008 ISH

GUDMAP_UQ_120908_1406.tar.gz.partaa
GUDMAP_UQ_120908_1406.tar.gz.partab

UQ_submission_PB_WMISH080908_for_submit.xls

ISH Low Res (58)
143 Little 19th-September-2008 ISH

GUDMAP_UQ_190908_1224.tar.gz

UQ_submission_PB_WMISH170908_for_submit.xls

ISH Low Res (15)
144 Little 23rd-September-2008 ISH

GUDMAP_UQ_230908_1400.tar.gz

UQ_submission_PB_SISH170908_for_submit.xls

ISH High Res (28)
145 Little 24th-September-2008 ISH

GUDMAP_UQ_240908_1327.tar.gz

UQ_submission_PB_240908_126_for_submit.xls

ISH High Res (10)

Created from Online Annotation Interface

146 McMahon 24th-September-2008 ISH

GUDMAP_HU_180908_1311.zip

Plate8-submission.xls

ISH Low Res (76)
147 Little 3rd-October-2008 ISH

GUDMAP_UQ_031008_1024.tar.gz

UQ_submission_PB_WMISH230908_125_original_for_submit.xls

ISH Low Res (12)

(Via online annotation tool)

148 Little 3rd-October-2008 ISH

GUDMAP_UQ_031008_1025.tar.gz

UQ_submission_PB_WMISH250908_for_submit.xls

ISH Low Res (12)

Created from Online Annotation Interface

149 McMahon 7th-October-2008 ISH

GUDMAP_HU_071008_1655.zip

Plate9-submission-1.xlsx

ISH Low Res (36)
150 Little 13th-October_2008 ISH

GUDMAP_UQ_131008_1102.tar.gz

UQ_submission_PB_WMISH180908_for_submit.xls

ISH Low Res (52)
151 McMahon 24th-October-2008 ISH

GUDMAP_HU_241008_1723.zip

Plate10-submit.xls

ISH Low Res (34)
152 Little 28th-October_2008 ISH

GUDMAP_UQ_281008_1350.tar.gz

UQ_submission_PB_SISHBatch133_for_submit.xls

ISH High Res (12)

Created from Online Annotation Interface

153 McMahon 08th-November-2008 ISH

GUDMAP_HU_081108_1201.tgz

Plate11-submission.xls

ISH Low Res (38)
154 McMahon 25th-November-2008 ISH

GUDMAP_HU_251108_1408.zip

Plate12-submission.xlsx

ISH Low Res (71)
155 Potter 12th-December-2008 Microarray

GUDMAP_Potterlab_121008_1100.zip

121108_GUDMAP_submission.xls
SSPASSOC9.xls

Microarray (3)
156 McMahon 12th-December-2008 ISH

GUDMAP_HU_121208_1627.tgz

Small_batch_of_5.xls

ISH Low Res (6)
157 Little 17th-December-2008 ISH

GUDMAP_UQ_171208_1502.tar.gz

UQ_submission_PB_SISH_150408_for_submit.xls

ISH High Res (25)
158 Little 17th-December-2008 ISH

GUDMAP_UQ_171208_1600.tar.gz

UQ_submission_PB_SISHBatch161_for_submit.xls

ISH High Res (17)
Batch 161 Created from Online Annotation Interface
159 Mendelsohn 22nd-December-2008 ISH

cmbatch61808.xls

GUDMAP_CU_221208.zip

ISH (16). Created from Online Annotation Interface
160 Potter 26th-Jan-2009 Microarray

012609_GUDMAP_submission.zip

012609_GUDMAP_submission.xls
SSPASSOC10.xls

ST-1.0 Array (15)
161 Potter 29th-Jan-2009 Microarray

GUDMAP_Potterlab_012709_1400.zip

012709_GUDMAP_submission.xls
SSPASSOC11.xls

ST-1.0 Array (6)
162 McMahon 28th-Jan-2009 ISH

GUDMAP_HU_280109_1616.tar.gz

Hyb12-11-submit.xls

Low Resolution (46)
163 Lessard 20th-Feb-2009 Microarray

GUDMAP_Lessard_200309_1650.zip

090319_1405_microarray_spreadsheet_NEM .xls
090319_1405_assoc_NEM.xls

Microarray (6)
164 Lessard 20th-Feb-2009 Microarray

GUDMAP_Lessard_200309_1655.zip

090320_1405_microarray_spreadsheet_NEM .xls
090320_1405_assoc_NEM.xls

Microarray (6)
165 Little 24th-Feb-2009 ISH

GUDMAP_UQ_230209_1400.tar.gz

UQ_submission_AB_Batch169_for_submit.xls

ISH High Res (2) Created from Online Annotation Interface Batch 169
166 Little 24th-Feb-2009 ISH

GUDMAP_UQ_230209_1401.tar.gz

UQ_submission_PB_Batch170_for_submit.xls

ISH High Res (11) Created from Online Annotation Interface Batch 170
167 Little 12th-March-2009 ISH

GUDMAP_UQ_120309_1135.tar.gz.partaa
GUDMAP_UQ_120309_1135.tar.gz.partab
GUDMAP_UQ_120309_1135.tar.gz.partac

UQ_submission_PB_WISHBatch171_for_submit.xls

Low Resolution (78) Created from Online Annotation Interface: Batch 171
168 Little 13th-March-2009 ISH

GUDMAP_UQ_130309_1513.tar.gz

UQ_submission_PB_WISHBatch173_for_submit.xls

Low Resolution (44) Created from Online Annotation Interface: Batch 173
169 Lessard 20th-March-2009 Microarray

GUDMAP_Lessard_200309_1600.zip

200309_1600_microarray_spreadsheet_NEM .xls
200309_1600_assoc_NEM.xls

Microarray (3)
170 McMahon 24th-March-2009 ISH

jing240309.tar.gz

McMahon_SISH_update_050209_Yu.xls

Low Resolution (8). Created from Online Annotation interface: Batch: 172
171 Potter 24th-March-2009 Microarray

GUDMAP_Potterlab_032409_0700.zip

PotterLab 032209_GUDMAP_submission.xls
SSPASSOC12.xls

Microarray Affymetrix ST-1.0 (3)
172 Potter 24th-March-2009 Microarray

GUDMAP_Potterlab_032409_1400_2.zip

PotterLab 032409_GUDMAP_2_submission.xls
SSPASSOC13.xls

Microarray Affymetrix ST-1.0 (3)
173 McMahon 25th-March-2009 ISH

GUDMAP_HU_250309_1539.zip

Hyb12b-submission.xlsx

Low Resolution (31)

174

 

McMahon 26th-March-2009 ISH

GUDMAP_HU_260309_1622.zip

Hyb15a-submit.xls

Low Resolution (42)
175 McMahon 9th-April-2009 ISH

GUDMAP_HU_090409_1446.tar.gz

Hyb15b-submission.xlsx

Low Resolution (26)
176 Little 9th-April-2009 ISH

GUDMAP_UQ_090409_1223.tar.gz.partaa_2
GUDMAP_UQ_090409_1223.tar.gz.partab
GUDMAP_UQ_090409_1223.tar.gz.partab

UQ_submission_PB_WISHBatch175_for_submit.xls

Low Resolution (115)